Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31023
(812 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 94 1e-19
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 91 1e-18
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 89 3e-18
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 68 6e-12
At1g67140.1 68414.m07638 expressed protein 36 0.024
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 36 0.042
At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) famil... 35 0.056
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.6
At4g23895.1 68417.m03437 pleckstrin homology (PH) domain-contain... 30 2.1
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 2.1
At3g18300.1 68416.m02329 expressed protein ; expression supporte... 29 2.8
At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase, pu... 28 6.4
At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase, pu... 28 6.4
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 6.4
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 6.4
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 8.5
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 93.9 bits (223), Expect = 1e-19
Identities = 62/165 (37%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Frame = +1
Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 390
KG P + ++ ++SE + E DE LK L+DIK E+P F LEF+F N YF N
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNPYFKN 184
Query: 391 TVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVGQFR 570
TVLTK Y M DE+ PL + G EI+W GK L +
Sbjct: 185 TVLTKSYHM---IDEDEPL------LEKAMGTEIDWYPGKC-LTQKILKKKPKKGSKNTK 234
Query: 571 TVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEI 696
+TK +SFFNFF+PP +P ED + A D+Q L+ D++I
Sbjct: 235 PITKLEDCESFFNFFSPPEVPDEDEDIDEERAEDLQNLMEQDYDI 279
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 90.6 bits (215), Expect = 1e-18
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Frame = +1
Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 390
KG P + ++ ++SE + E DE L L+DIK E+P F LEF+F N YF N
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKN 183
Query: 391 TVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVGQFR 570
T+LTK Y M DE+ PL + G EI+W GK L +
Sbjct: 184 TLLTKAYHM---IDEDEPL------LEKAIGTEIDWYPGKC-LTQKILKKKPKKGAKNAK 233
Query: 571 TVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEI 696
+TK+ +SFFNFFNPP +P ED + A ++Q L+ D++I
Sbjct: 234 PITKTEDCESFFNFFNPPQVPDDDEDIDEERAEELQNLMEQDYDI 278
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 89.0 bits (211), Expect = 3e-18
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Frame = +1
Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 390
KG P + ++ + +E + E DE LK L+DIK E+P F LEF+F N YF N
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKN 183
Query: 391 TVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVGQFR 570
TVLTK Y M DE+ P+ + G EI W GK L +
Sbjct: 184 TVLTKTYHM---IDEDEPI------LEKALGTEIEWYPGKC-LTQKILKKKPKKGSKNTK 233
Query: 571 TVTKSVQADSFFNFFNPPTLP---EDPNSTVASDVQALLTADFEI 696
+TK+ +SFFNFF+PP +P ED + +A ++Q + D++I
Sbjct: 234 PITKTEDCESFFNFFSPPQVPDDDEDLDDDMADELQGQMEHDYDI 278
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 68.1 bits (159), Expect = 6e-12
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Frame = +1
Query: 211 KGYPRLLVQHIQECLMLSEMMQEHDEPILKCLQDIKVQMHEDPI-SFTLEFYFAPNEYFT 387
+G P + ++ ML+ + E DE LK L+DI+ ED +F LEF F N YF
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFK 185
Query: 388 NTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKT*LXXXXXXXXXXXXVGQF 567
N+VL+K Y + DE+ GP + G +I W GK +
Sbjct: 186 NSVLSKTYHVN---DED------GPVLEKVIGTDIEWFPGKCLTHKVVVKKKTKKGPKKV 236
Query: 568 RTV--TKSVQADSFFNFFNPPTLPE--------DPNSTVASDVQALLTADFEIVI 702
+ TK+ +SFFNFF PP +PE D ++ + ++Q L+ D++I +
Sbjct: 237 NNIPMTKTENCESFFNFFKPPEIPEIDEVDDYDDFDTIMTEELQNLMDQDYDIAV 291
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 36.3 bits (80), Expect = 0.024
Identities = 30/96 (31%), Positives = 45/96 (46%)
Frame = -2
Query: 343 LWGLHAFAL*YLASILELVHHVLASFR*ALDIPEYVVPKVWDTLYIGIHWRLDSLVILLF 164
+W LH L A+ L V HV A+ ALDI W L GI ++++V +L
Sbjct: 816 IWALHGLLLTIEAAGLSFVSHVQAALGLALDI-LLTEESGWIDLSQGIGRLINAIVAVLG 874
Query: 163 LTLSDGSILYRPS*LFFFSVITPWVETFIIIRFICA 56
LS GSIL+ + I+ W E ++ ++ A
Sbjct: 875 PELSPGSILFSRC-KSVIAEISSWQEIPTLLEYVNA 909
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 259 LSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNTVLTKEY 411
L E++ E D+ I K L + V+ +D S +++ F F PN +F + LTK +
Sbjct: 87 LGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPNPFFEDGKLTKTF 138
>At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105 SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile:
PF00956 nucleosome assembly protein (NAP)
Length = 256
Score = 35.1 bits (77), Expect = 0.056
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 259 LSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNTVLTKEY 411
L +++ E D+ I K L ++V+ +D S +++ F+F N +F + LTK +
Sbjct: 91 LGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFFEDAKLTKTF 142
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 101 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 220
DD +EEE + + +I E EEK D +E P D N+K +
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80
>At4g23895.1 68417.m03437 pleckstrin homology (PH) domain-containing
protein-related
Length = 247
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = -3
Query: 786 ITVIVHHPGVPSPGVEPARHETRRASRMYDDLKVR--SQQRL---YIRGDCRVRIF--RQ 628
+ ++ H PSP E ++H+T +S+ DD +R SQ R R + +F R+
Sbjct: 9 LNILPDHFSAPSPTAESSQHDTPSSSQPKDDSSLRPYSQSRTRRNLKRAATMLNLFTLRR 68
Query: 627 SWWVKEIEEGVSL 589
WV + +E V L
Sbjct: 69 LPWVSDGQEKVEL 81
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 62 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 211
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At3g18300.1 68416.m02329 expressed protein ; expression supported
by MPSS
Length = 274
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = -3
Query: 762 GVPSPGVEPARHETRRASRMYDDLKVRSQQRLYIRGDCRVRIFRQSWWVKEIEEGVSLDG 583
GVP PGV P+ H +S + R Q+ G R S+W+ + G S G
Sbjct: 205 GVPRPGVNPSSHMRPPSSFCCSSYQFRPQKHAGKNGGGR----GGSFWIAPVIGGPSPFG 260
Query: 582 LSDSAKLT 559
L +LT
Sbjct: 261 LGSILRLT 268
>At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative / pasticcino
1-D (PAS1-D) nearly identical to pasticcino 1-D
[Arabidopsis thaliana] GI:3080740
Length = 545
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 431 MKRVH*NLKVLKFILARDVK*TGMLVKRNCQDHKEETEAQVP 556
++ VH ++++ FI RD+ G L+KR +D + E P
Sbjct: 157 LEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCP 198
>At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative / pasticcino
1-D (PAS1-D) nearly identical to pasticcino 1-D
[Arabidopsis thaliana] GI:3080740
Length = 635
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 431 MKRVH*NLKVLKFILARDVK*TGMLVKRNCQDHKEETEAQVP 556
++ VH ++++ FI RD+ G L+KR +D + E P
Sbjct: 247 LEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCP 288
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 140 NAAITEGEEKKDDKAIEPPMDPNVKGIP 223
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 140 NAAITEGEEKKDDKAIEPPMDPNVKGIP 223
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 645 VRIFRQSWWVKEIEEGVSLDG 583
V++ R ++WV++IE G+ DG
Sbjct: 156 VKLIRINYWVEKIESGIHFDG 176
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,169
Number of Sequences: 28952
Number of extensions: 317287
Number of successful extensions: 1100
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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