Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31022
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    29   1.2  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   2.1  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    27   2.7  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   6.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   8.3  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 385 VDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWMTMKMGTNNDETNYGE 558
           +DP    P    K  F  +P+E+E   V  K+   F  E+  M  K+ T  D   Y +
Sbjct: 755 IDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYAD 812


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 223 AWPRSRLWFGWRGTFFILITG 161
           +W  S+LWF +   FFI+ITG
Sbjct: 215 SWIASKLWFRFFILFFIIITG 235


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 761 GLANPGRFGGTGNGLSLGRWTLQFVLINSYLDFQLGA 651
           GL + GR   TG+ + L  W  + + INS++   + A
Sbjct: 26  GLGHEGRMVPTGSKVELPFWLAEVLAINSFVSIHMPA 62


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +1

Query: 388 DPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWMTMKMGTNNDETNYGEDDS 567
           D   +G     +DE V   +E++++    + + E  NE+  +  + G+ N       +  
Sbjct: 235 DESSSGSESYERDEDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQE 294

Query: 568 NMGMTGFD 591
           NM M+G +
Sbjct: 295 NMNMSGIE 302


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 616 YFLEVKVEQSGDAPSWKSRYELIKTN*SVHLP---NDRPLPVPPNLPGLANPWGLAPS 780
           YF++   E++  A   +S+ ++ K++ S       N+ P P PP    LA+P  ++ S
Sbjct: 45  YFVKHNFEEAAQAFLRESKIQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISES 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,831
Number of Sequences: 5004
Number of extensions: 74390
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)