Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31022
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1036 + 9021395-9021658,9024214-9024690                           33   0.30 
06_03_0355 + 19822110-19824491                                         31   0.93 
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    31   1.2  
02_01_0730 - 5468899-5469517,5470066-5470127,5470225-5470353           31   1.2  
02_05_0655 + 30668706-30668849,30669043-30669471                       30   2.1  
08_01_1005 - 10183796-10185183,10186673-10186859                       28   8.7  

>07_01_1036 + 9021395-9021658,9024214-9024690
          Length = 246

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 2   MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 160
           M  ++  I+ + DVS+  LR  + +MY  E  + ++  +  +  AE+ +VK L
Sbjct: 103 MEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMASDLLVLAEKYEVKNL 155


>06_03_0355 + 19822110-19824491
          Length = 793

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 424 DEFVTIPDEDENNAVAPKMEPEFVNESMWMTMKMGTNND-ETNYGEDDSNMGMTG 585
           +EFV +P++DE  A     + +  N++  +++ +G+ ND ++  GE+D+N+   G
Sbjct: 249 EEFVAVPEDDEEEA-----DGDEENDATGLSLGIGSANDYDSTDGEEDANVENLG 298


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  VFLKDVSHSALRDLLQFMYQGEVNVKQEEL 115
           VF +DV   A   L+QFMY GE+ V  EE+
Sbjct: 393 VFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422


>02_01_0730 - 5468899-5469517,5470066-5470127,5470225-5470353
          Length = 269

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 734 HQTFQDWLTPGALLQ---VPNVASAVKAKTPFFPGGPLKSP 847
           H+ FQDW TPG++ +   +        +  P +PGGPL +P
Sbjct: 163 HRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNP 203


>02_05_0655 + 30668706-30668849,30669043-30669471
          Length = 190

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 678 FIPGFPAWCIAGLLHLHLQKILTSPVAEPIKTSHSHIRIVLSVIS 544
           F+ G P   I GL+ LHL   L     E IKTS S   + L ++S
Sbjct: 21  FVGGAPVGGIDGLMGLHLSGRLVPRFKEVIKTSQSGSLLRLGLVS 65


>08_01_1005 - 10183796-10185183,10186673-10186859
          Length = 524

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 761 GLANPGRFGGTGNGLSLGRWTLQFV 687
           GL+N G FGGT   + LGR  L  V
Sbjct: 288 GLSNRGLFGGTAGLMGLGRTELSLV 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,985,281
Number of Sequences: 37544
Number of extensions: 532759
Number of successful extensions: 1618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)