Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31022
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.72 
SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)                     31   1.7  
SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)                     31   1.7  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.7  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   30   2.2  
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)                     30   2.9  
SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)                   30   2.9  
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   25   5.7  
SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)                     29   6.7  
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               28   8.8  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   8.8  
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)                      28   8.8  

>SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +2

Query: 11  TQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 148
           ++  I+ +KD+    ++ L++F Y G V +  E + + ++TA  LQ
Sbjct: 48  SKQKIITMKDILPDYMQVLVEFAYTGRVEITVENVQNLLATASLLQ 93


>SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 587

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 20  PIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTG 166
           P V L+++  S +  +L ++Y GE+ V +      I++A  L +  L G
Sbjct: 69  PSVKLQELRASVMNHILTYLYTGEITVTELNAEDLIASANYLLIPRLKG 117


>SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)
          Length = 1188

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 630  HLQKILTSPVAEPIKTSHSHIRIVLSVISFVIVRAHLHRHPHTLINKLWFHFGSDSIV 457
            H  K +   +A+ + T   H  +  S  + VI+ A +HR P T++N+ + +F   S++
Sbjct: 849  HCIKPIAEQIADSV-TDIGHEVLNTSPSTDVIISAIIHRFPRTIVNRSFKNFNETSLL 905


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 494 TNSGSILGATALFSSSSGIVTNSSFAEPEGPASSGST 384
           TNSGS +G+T++ +S  G  T+   + P G  S G++
Sbjct: 510 TNSGSTMGSTSVGTSGPGGSTSGGTSGPGGATSGGTS 546


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
 Frame = -3

Query: 615 LTSPVAEPIKTSHSHIRIVLSVISFVIVRAHLHRHP--HTLINKLWFHFGS-DSIVLIFV 445
           + SPV + +  S   + +++ V+  V+V   + R     T +N L  +  + D + L+FV
Sbjct: 591 MPSPV-DLVLASVFAVLVLIGVVGNVLVCLVILRFSSMRTPMNYLLLNLAAADLLTLLFV 649

Query: 444 WYRHKFV--FCRTRGTCFQWIYAFSFR 370
             ++ F+  F    G CF + +AF+FR
Sbjct: 650 SPQYVFIHTFVHPIGECFSFFFAFAFR 676


>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 628

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/53 (20%), Positives = 30/53 (56%)
 Frame = +2

Query: 2   MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 160
           M+ ++   V L+++   A+++++ F Y G++ + +  +   +  A  LQV+ +
Sbjct: 66  MSESRQDTVTLQELDEKAMQNMIDFFYSGKIEISELNVQEVLPIACLLQVQSV 118


>SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 26  VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 151
           V ++ +       LL F+Y G +NV +E +   +  A+ LQ+
Sbjct: 75  VTIQGIDSETFSALLDFIYTGVINVNEENVQQLLPAAKMLQL 116


>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 389 IHWKQVPLVLQKTNL*RYQTK 451
           +H++ +P V+QKTNL RY  K
Sbjct: 24  VHFRSMPRVVQKTNLTRYNLK 44


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 25.0 bits (52), Expect(2) = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 721 PLPVPPNLPGLANPWGLAPSSECRQ 795
           PLP+PP LPG  +P    P++  +Q
Sbjct: 476 PLPLPPELPG--SPGDSPPATSPKQ 498



 Score = 22.2 bits (45), Expect(2) = 5.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 706 LPNDRPLPVPPN 741
           LP+D P P+PP+
Sbjct: 451 LPSDEPPPLPPD 462


>SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 571

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 2   MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQL 145
           M   Q   V LK    + + DLL ++Y G++ V +     F++ A+ L
Sbjct: 54  MRERQENTVNLKQFPVNIMEDLLTYLYTGKLEVTEATAQDFLAAADFL 101


>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 591 IKTSHSHIRIVLSVISFVIVRAHLHRHPHTLINKLWFHFGSDSIVLI 451
           + +S S   I++ +IS + +  H H HP + ++     F  ++ VL+
Sbjct: 79  LSSSASSANIIIIIISIITLHHHYHHHPPSSLSSSSSSFYRENNVLL 125


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = -3

Query: 642 LLHLHLQKILTSPVAEPIKTSH-SHIRIVL----SVISFVIVRAHLHRHPHTLINKLWFH 478
           ++H H   I+    +  I   H S   I++    S  S +I+  H H HP +  + +  H
Sbjct: 178 IIHHHPSSIIIHHPSSSIIHHHPSSSSIIIHHHPSSSSSIIIIIHHHHHPSS-SSSIIIH 236

Query: 477 FGSDSIVLIFVWYRH 433
             S SI++I + + H
Sbjct: 237 HPSSSIIIIIIIHHH 251


>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
          Length = 249

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 329 Q*HQITLLPHKVDQRNENA*IHWKQVPLVLQKTNL*RYQTKMR 457
           Q H+I+L  HK   R     +   + PL   KT L +Y+T +R
Sbjct: 103 QQHKISLQQHKTRLRQHKTPLRQHKTPLRQHKTPLRQYKTPLR 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,896,875
Number of Sequences: 59808
Number of extensions: 580088
Number of successful extensions: 1747
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)