Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31022
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical pr... 31 0.84
AF040661-17|AAG24227.2| 336|Caenorhabditis elegans Serpentine r... 29 3.4
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 29 5.9
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 29 5.9
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 29 5.9
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 29 5.9
U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine rece... 29 5.9
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 29 5.9
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 29 5.9
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 29 5.9
Z68216-4|CAA92463.2| 565|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical
protein F01G12.1 protein.
Length = 178
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 534 VRAHLHRHPHTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 382
+R+H H HT+ K+WFH+G D +VL W K G F WI+A
Sbjct: 110 MRSHDH---HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157
>AF040661-17|AAG24227.2| 336|Caenorhabditis elegans Serpentine
receptor, class h protein59 protein.
Length = 336
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 564 IVLSVISF-VIVRAHLHRHPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRT 412
+ LS+++F +I++ L R + L FHF S ++ L+F Y ++F T
Sbjct: 36 VPLSILAFYIILKKTLSRMKTMKVPLLIFHFWSTNLDLMFTVYTAPYIFIPT 87
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 747 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 786
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 350 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 389
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 710 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 749
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 222 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 261
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 747 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 786
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 350 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 389
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 710 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 749
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 727 PVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
P P L G+A P + P+ CR C G P P G P
Sbjct: 129 PGAPGLAGIAPPVTIDPTKGCRVCPNG--PRGPTGPP 163
>U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine
receptor, class v protein31 protein.
Length = 324
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 248 IVFVVTTWGLASKSALVWMAWNFLHF 171
++F TTWGL +K + M + + HF
Sbjct: 59 MIFYTTTWGLRTKPGIREMLYTYQHF 84
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 222 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 261
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 350 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 389
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 715 DRPLPVPPNLPGLANPWGLAPSSECRQCCKG*NPIFPRGAP 837
D+ LP PP +PGLA P G P S P P G P
Sbjct: 689 DQGLPGPPGMPGLAGPPG-PPGSGTGHGSGADGPQGPPGLP 728
>Z68216-4|CAA92463.2| 565|Caenorhabditis elegans Hypothetical
protein F27C8.5 protein.
Length = 565
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 32 LKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 151
+ D ++R + +MY GE+++ + +A ++ A L+V
Sbjct: 76 MTDFDPDSVRRVFDWMYSGEIDIPETTIADVLAVASYLRV 115
>U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical
protein T07F8.1 protein.
Length = 822
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 86 GEVNVKQEELASFISTAEQLQVKGLTGNQ 172
G K EE+ +I ++++ +GLTGNQ
Sbjct: 650 GPTKQKLEEVLDYIGCSQKINYQGLTGNQ 678
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,903,205
Number of Sequences: 27780
Number of extensions: 434662
Number of successful extensions: 1218
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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