Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31022
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    34   0.11 
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    32   0.44 
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    32   0.44 
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai...    32   0.59 
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai...    32   0.59 
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter...    30   1.8  
At5g58950.1 68418.m07384 protein kinase family protein concontai...    29   4.1  
At5g20690.1 68418.m02457 leucine-rich repeat transmembrane prote...    29   5.5  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   9.6  
At1g34070.1 68414.m04224 hypothetical protein                          28   9.6  

>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 373 KRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWMTMKMGT 531
           K+K VD L++G S   K++   +P +     V  KME E  N+++W     GT
Sbjct: 84  KQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRNDAIWQGKCSGT 136


>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 23  IVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEE 181
           ++ L+ VS+  L  LLQ++Y G   + + ELA     + + +V  L   Q EE
Sbjct: 246 VIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQCEE 297



 Score = 32.3 bits (70), Expect = 0.44
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 103
           M+ +    ++L DVS  A + ++ FMY GE+N++
Sbjct: 386 MSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 23  IVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEE 181
           ++ L+ VS+  L  LLQ++Y G   + + ELA     + + +V  L   Q EE
Sbjct: 246 VIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQCEE 297



 Score = 32.3 bits (70), Expect = 0.44
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 103
           M+ +    ++L DVS  A + ++ FMY GE+N++
Sbjct: 386 MSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419


>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 26  VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 160
           + L D+SH  L+ LL+F+Y G +     +  S    A++  +  L
Sbjct: 68  ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112


>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 26  VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 160
           + L D+SH  L+ LL+F+Y G +     +  S    A++  +  L
Sbjct: 68  ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112


>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
           protein (GI:17483747) [Mus musculus]
          Length = 243

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 32  LKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 160
           + DVS+ ALR  + ++Y  E  + ++     +  +E+ QVK L
Sbjct: 112 ISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHL 154


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 427 EFVTIPDEDENNAVAPKMEPEFVNE 501
           + +T+PD+D+N  +  ++E +F  E
Sbjct: 234 KLITVPDDDDNGCLGARLEKQFTKE 258


>At5g20690.1 68418.m02457 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase PRK1,
           tomato, PIR:T07865
          Length = 659

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 788 HSELGARPQGLANPGRFGGTGNGLSLGRWTLQFVLINS 675
           HS+ G+  +G++N G+ G  G G +LG      +++N+
Sbjct: 335 HSDDGSTKKGVSNIGKGGNGGGGGALGGGMGDIIMVNT 372


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 388 DPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 510
           +PLE    G   D F T+P+        P +E +    ++W
Sbjct: 550 EPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLW 590


>At1g34070.1 68414.m04224 hypothetical protein
          Length = 308

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 825 GKNGVLAFTALATFGTWSKAPGVSQSWKVW 736
           G+ G  ++  + TF +W++ P    S+++W
Sbjct: 252 GRGGRFSYYNMPTFNSWNRPPFYQNSYQMW 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,227,333
Number of Sequences: 28952
Number of extensions: 414178
Number of successful extensions: 1132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)