Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31021
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)                 32   0.54 
SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_2334| Best HMM Match : p450 (HMM E-Value=0)                         29   3.8  
SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11)                28   6.7  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 28   8.8  

>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
          Length = 896

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +1

Query: 592 RVGSIP*HSPSPVITTGPQLACIQANSGHPRTRPSV 699
           R G +P  S  P  TTGP+LAC      HP  RP V
Sbjct: 454 RGGGLPPRSRHPPRTTGPELAC-PNRLPHPTRRPGV 488


>SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 522  PSFINQKLFLSPSIHLWISPPSGS 593
            P  + + + L P +HLW +PP+GS
Sbjct: 1084 PLHLKEHVELPPPLHLWNTPPNGS 1107


>SB_2334| Best HMM Match : p450 (HMM E-Value=0)
          Length = 498

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 115 IFLIIDTVQPNFRLFRFSIQLRNIKYY 195
           +FL++      F++FRF IQ  NIKY+
Sbjct: 228 MFLMLPFASVLFKIFRFLIQNNNIKYF 254


>SB_27463| Best HMM Match : C_tripleX (HMM E-Value=0.11)
          Length = 123

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 616 SPSPVITTGPQLACIQANSGHPRTRPSV*PPPFGP 720
           S +P         C  ANSG P+  P+  PPP  P
Sbjct: 58  SCNPTCYPSCDAGCCAANSGSPQASPAYQPPPAYP 92


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 621  QPCHNH--RSPTGLYPGKFGASS 683
            Q CHNH   SP GL  G FGA S
Sbjct: 2370 QWCHNHVINSPVGLACGGFGAGS 2392


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 655 CIQANSGHPRTRPSV*PPPFGP 720
           C  ANSG P+  P+  PPP  P
Sbjct: 42  CCAANSGSPQASPAYQPPPAYP 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,349,899
Number of Sequences: 59808
Number of extensions: 449151
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)