Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31020
         (545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7RXG3 Cluster: Predicted protein; n=1; Nematostella ve...    35   1.4  
UniRef50_Q8YGZ1 Cluster: Cell wall degradation protein; n=4; Bru...    32   7.5  
UniRef50_A6X136 Cluster: Peptidoglycan-binding domain 1 protein ...    32   7.5  

>UniRef50_A7RXG3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 492

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
           +I HHY+FV I+  YI+ +  H  FF +  H
Sbjct: 215 IITHHYFFVIITHHYIFSIITHHYFFSIITH 245



 Score = 34.7 bits (76), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
           +I HHY+FV I+  YI+ +  H  FF +  H
Sbjct: 359 IITHHYFFVIITHHYIFSIITHHYFFSIITH 389



 Score = 32.3 bits (70), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPL 505
           +I HHY+FV I+  Y + +  H  FF +
Sbjct: 179 IITHHYFFVIITHHYFFSIITHHFFFSI 206



 Score = 32.3 bits (70), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPL 505
           +I HHY+FV I+  Y + +  H  FF +
Sbjct: 323 IITHHYFFVIITHHYFFSIITHHFFFSI 350


>UniRef50_Q8YGZ1 Cluster: Cell wall degradation protein; n=4;
           Brucella|Rep: Cell wall degradation protein - Brucella
           melitensis
          Length = 531

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 248 FFYNLIKLIVFPTKWSIARF*FINEML 328
           FFYN ++ +VF   W + R   +NEML
Sbjct: 334 FFYNKVQTVVFNPSWGVPRSIILNEML 360


>UniRef50_A6X136 Cluster: Peptidoglycan-binding domain 1 protein
           precursor; n=1; Ochrobactrum anthropi ATCC 49188|Rep:
           Peptidoglycan-binding domain 1 protein precursor -
           Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
           NCTC 12168)
          Length = 668

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 248 FFYNLIKLIVFPTKWSIARF*FINEML 328
           FFYN ++ +VF   W + R   +NEML
Sbjct: 471 FFYNKVQTVVFNPSWGVPRSIILNEML 497


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,173,794
Number of Sequences: 1657284
Number of extensions: 8459058
Number of successful extensions: 14234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14224
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)