Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31020
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.0  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   5.5  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   7.3  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   9.6  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 65  QRCVGSPRICLKISLNNHCVKSPT*NLFFQMIVKVS 172
           QR   +PR  +++ +N  C +S T N+F Q++  +S
Sbjct: 532 QRICLNPRALVELYINYDCDRSSTTNVFEQLLFSIS 567


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 499 PPRFSHSPLLIN 534
           PP+F+H PLL+N
Sbjct: 262 PPKFAHLPLLVN 273


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 250 KHQSTALALIIMANLHSHSIFL*NCKGHFNYHLKKKVLGRRFNAM 116
           KH +T    + + NL S S  L  C+  +   L ++V+G  F A+
Sbjct: 518 KHMNTLHIGVALMNLISGSFILVMCQAFYVEELARQVIGIIFFAL 562


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  FSLK-IQCCLKVTPFEQRCVGSPRICLKISLNNHCVKSP 133
           FSLK IQ C  + P + + +       ++ + N C + P
Sbjct: 206 FSLKGIQSCFSLNPMDSKTLAVGTYSNRVGIYNDCGRRP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,306
Number of Sequences: 5004
Number of extensions: 40703
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)