Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31020
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    31   0.79 
07_03_1208 - 24896905-24896931,24897330-24897341,24898058-248983...    27   7.4  

>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 394 KFINKSSVMCNYASLLFCIYLWYIHL*FALSSLVFPPRFSHSPLLINI 537
           K+ +  S    YAS+LFC  +  I L   L+S++F P FS     + I
Sbjct: 271 KYCSGRSRKIGYASILFCFLIVLITL--FLNSIIFAPNFSRITAAVGI 316


>07_03_1208 -
           24896905-24896931,24897330-24897341,24898058-24898333,
           24898410-24898466,24898561-24898638,24899112-24899198,
           24899815-24899904,24900012-24900218
          Length = 277

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 62  EQRCVGSPRICLKISLNNHCVKSPT 136
           ++R + SP    +I L +HC KSPT
Sbjct: 31  QRRRLPSPAPARRIQLRSHCTKSPT 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,022
Number of Sequences: 37544
Number of extensions: 202106
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)