Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31020
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 35 0.050
SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12) 30 1.4
SB_59649| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_51595| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_36470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 28 4.3
SB_49650| Best HMM Match : RVT_1 (HMM E-Value=1.3) 28 5.7
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 28 5.7
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3) 27 7.6
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 34.7 bits (76), Expect = 0.050
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HHY+FV I+ YI+ + H FF + H
Sbjct: 941 IITHHYFFVIITHHYIFSIITHHYFFSIITH 971
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HHY+FV I+ YI+ + H FF + H
Sbjct: 1067 IITHHYFFVIITHHYIFPIITHHDFFSIITH 1097
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I +HY+FV I+ YI+ + H FF + H
Sbjct: 1103 IITYHYFFVIITHHYIFSIFTHHYFFSIITH 1133
Score = 32.3 bits (70), Expect = 0.27
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPL 505
+I HHY+FV I+ Y + + H FF +
Sbjct: 1031 IITHHYFFVIITHHYFFSIITHHFFFSI 1058
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFF 499
+I HHY FV I+ YI+ + H FF
Sbjct: 1130 IITHHYSFVIITYHYIFSIFTHHYFF 1155
Score = 30.7 bits (66), Expect = 0.81
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HHY+F I+ Y + + H FF + H
Sbjct: 923 IITHHYFFSIITDHYFFSIITHHYFFVIITH 953
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HHY F I+ Y + + H FF + H
Sbjct: 950 IITHHYIFSIITHHYFFSIITHHFFFSIITH 980
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HHY+F I+ + + + H FF + H
Sbjct: 959 IITHHYFFSIITHHFFFSIITHHFFFSIITH 989
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HH++F I+ Y + + H FF + H
Sbjct: 986 IITHHFFFSIITHHYFFSIITHHFFFSIITH 1016
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HHY+F I+ + + + H FF + H
Sbjct: 995 IITHHYFFSIITHHFFFSIITHHFFFSIITH 1025
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HHY+F I+ Y + + H FF + H
Sbjct: 1022 IITHHYFFSIITHHYFFVIITHHYFFSIITH 1052
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HH++F I+ Y + + H FF + H
Sbjct: 1049 IITHHFFFSIITDHYFFSIITHHYFFVIITH 1079
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HH++F I+ Y + + H FF + H
Sbjct: 1013 IITHHFFFSIITHHYFFSIITHHYFFVIITH 1043
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HH++F I+ + + + H FF + H
Sbjct: 968 IITHHFFFSIITHHFFFSIITHHFFFSIITH 998
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HH++F I+ + + + H FF + H
Sbjct: 977 IITHHFFFSIITHHFFFSIITHHYFFSIITH 1007
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 422 VIMHHYYFVFISGIYIYDLHYHRLFFPLDFH 514
+I HH++F I+ + + + H FF + H
Sbjct: 1004 IITHHFFFSIITHHFFFSIITHHYFFSIITH 1034
>SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12)
Length = 885
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 364 FYFYLASCVLNV*HFIYELKPCYRPFSW 281
F +Y+ C L+ H+I+E K +R +W
Sbjct: 649 FAYYINHCTLHGFHYIFETKSLFRKIAW 676
>SB_59649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -2
Query: 385 VYICFFNFYFYLASCVLNV*HFIYEL----KPCYRP 290
V++CF N + +SC L V +F +L +PC+RP
Sbjct: 27 VFLCFRNTAIFRSSCKLPVTNFRLKLSTIKEPCHRP 62
>SB_51595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -2
Query: 385 VYICFFNFYFYLASCVLNV*HFIYEL----KPCYRP 290
V++CF N + +SC L V +F +L +PC+RP
Sbjct: 27 VFLCFRNTAIFRSSCKLPVTNFRLKLSTIKEPCHRP 62
>SB_36470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -2
Query: 385 VYICFFNFYFYLASCVLNV*HFIYEL----KPCYRP 290
V++CF N + +SC L V +F +L +PC+RP
Sbjct: 27 VFLCFRNTAIFRSSCKLPVTNFRLKLSTIKEPCHRP 62
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -2
Query: 385 VYICFFNFYFYLASCVLNV*HFIYEL----KPCYRP 290
V++CF N + +SC L V +F +L +PC+RP
Sbjct: 333 VFLCFRNTAIFRSSCKLPVTNFRLKLSTIKEPCHRP 368
>SB_49650| Best HMM Match : RVT_1 (HMM E-Value=1.3)
Length = 379
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -2
Query: 385 VYICFFNFYFYLASCVLNV*HFIYEL----KPCYRP 290
V++CF N + +SC L V +F +L +PC+RP
Sbjct: 35 VFLCFRNTAVFRSSCKLPVTNFRLKLSTMKEPCHRP 70
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 385 VYICFFNFYFYLASCVLNV*HFIYELK----PCYRP 290
V++CF N + +SC L V +F +L PC+RP
Sbjct: 261 VFLCFRNTAIFRSSCKLPVTNFRLKLSTIKVPCHRP 296
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 385 VYICFFNFYFYLASCVLNV*HFIYEL----KPCYRP 290
V++CF N + +SC L V F +L +PC+RP
Sbjct: 322 VFLCFRNTAIFRSSCKLPVTSFRLKLSTIKEPCHRP 357
>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
Length = 356
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 431 HHYYFVFISGIYIYDLHYHRLFFPLDFH 514
H++Y+ + Y YD HYH + D+H
Sbjct: 307 HYHYYYYYDYHYHYDYHYH-YDYHYDYH 333
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,889
Number of Sequences: 59808
Number of extensions: 263529
Number of successful extensions: 490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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