Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31020
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.5  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   4.7  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   4.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 355 YLASCVLNV*HFIYELKPCYRPF-SW 281
           Y +SC +NV +F ++ + C   F SW
Sbjct: 154 YKSSCEINVEYFPFDEQSCIMKFGSW 179


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 214 ANLHSHSIFL*NCKGH 167
           A LHSH+I   + KGH
Sbjct: 255 AGLHSHTIIYLSAKGH 270


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 425 LHITEDLLINFQAS 384
           LHI+ED+  N QA+
Sbjct: 44  LHISEDIATNIQAA 57


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 425 LHITEDLLINFQAS 384
           LHI+ED+  N QA+
Sbjct: 44  LHISEDIATNIQAA 57


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 509 NLGGKTSDDNANHKCIYQR*IQNNND 432
           +L  KT  +N N+K  Y     NNN+
Sbjct: 317 SLSNKTIHNNNNYKYNYNNNNYNNNN 342


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 503 GGKTSDDNANHKCI 462
           GGKTS ++A  KC+
Sbjct: 579 GGKTSPNSAVRKCM 592


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 530 ISNGECENLGGKTSDDNANHKCIY 459
           +SN    N+    +D+N N K  Y
Sbjct: 85  LSNNYISNISNYNNDNNYNKKLYY 108


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 509 NLGGKTSDDNANHKCIYQR*IQNNN 435
           +L  KT  +N N+K  Y     NNN
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 509 NLGGKTSDDNANHKCIYQR*IQNNN 435
           +L  KT  +N N+K  Y     NNN
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 509 NLGGKTSDDNANHKCIYQR*IQNNN 435
           +L  KT  +N N+K  Y     NNN
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,922
Number of Sequences: 438
Number of extensions: 2851
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)