Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31019
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   4.7  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
 Frame = +2

Query: 5   IGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELVLLIGQ----FPTLSTNIVMLT 166
           + + F T W++FS   T+  K + S     ILL    L +          T ST +    
Sbjct: 126 VAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185

Query: 167 TVSWNFFKFLLWYCILIIAFALSFYTLFRQKMKKI 271
            ++     F+ W   + + F +    L+R    K+
Sbjct: 186 ILNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
 Frame = +2

Query: 5   IGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELVLLIGQ----FPTLSTNIVMLT 166
           + + F T W++FS   T+  K + S     ILL    L +          T ST +    
Sbjct: 126 VAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185

Query: 167 TVSWNFFKFLLWYCILIIAFALSFYTLFRQKMKKI 271
            ++     F+ W   + + F +    L+R    K+
Sbjct: 186 ILNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
 Frame = +2

Query: 5   IGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELVLLIGQ----FPTLSTNIVMLT 166
           + + F T W++FS   T+  K + S     ILL    L +          T ST +    
Sbjct: 126 VAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185

Query: 167 TVSWNFFKFLLWYCILIIAFALSFYTLFRQKMKKI 271
            ++     F+ W   + + F +    L+R    K+
Sbjct: 186 ILNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
 Frame = +2

Query: 5   IGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELVLLIGQ----FPTLSTNIVMLT 166
           + + F T W++FS   T+  K + S     ILL    L +          T ST +    
Sbjct: 126 VAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185

Query: 167 TVSWNFFKFLLWYCILIIAFALSFYTLFRQKMKKI 271
            ++     F+ W   + + F +    L+R    K+
Sbjct: 186 ILNTIVTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 165 VNMTMLVDSVGNCPISRTNSADDNKI 88
           VN T+LVD+ G C  +  N  D +K+
Sbjct: 63  VNATILVDTGGTCECTEANRDDCDKL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,663,566
Number of Sequences: 5004
Number of extensions: 77947
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)