Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31019
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894...    31   1.6  
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174...    30   2.1  
11_04_0312 - 16259612-16260231,16260264-16262796                       29   4.9  
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405...    29   4.9  
01_07_0150 + 41508546-41508636,41509384-41510343,41511082-415115...    28   8.6  

>03_06_0184 -
           32188778-32188947,32189104-32189173,32189332-32189473,
           32189559-32189739,32189857-32190051,32190782-32190795,
           32190815-32190864,32191493-32191519
          Length = 282

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/39 (30%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 LLIGQFPTLSTNIVMLTTVSWNFFKFLLWYCILIIAFAL 232
           +L+ +   +S++++ L T  W FF++L ++ + I++FAL
Sbjct: 99  VLLWRNKKISSSVLALATAIWVFFEWLDYHFLTIVSFAL 137


>08_01_0217 +
           1738321-1739104,1739683-1739915,1740002-1740292,
           1740524-1740616,1740912-1741040,1741522-1741695,
           1741883-1741990,1742073-1742279
          Length = 672

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 618 VLVVLAVQHSKL*NLIKPK---TLFLMENPLQRGIWLVSPISWPE 743
           V V + V+H KL N  +P     L L+  PL+ G W V+   WPE
Sbjct: 528 VRVDVVVRHIKLNNGGRPLYMGNLNLLHRPLRMGKWTVTTEEWPE 572


>11_04_0312 - 16259612-16260231,16260264-16262796
          Length = 1050

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
 Frame = +3

Query: 594 KNAFTSIKVLVVLAVQHSKL*NLIKP-------KTLFLMENPLQRGIWLVSPI 731
           +N F S++ L VL + +S + +L+         +TL L ++ + RGIWLVS +
Sbjct: 570 ENFFQSMQQLAVLDMSNSSIHSLLLSTKDLAAVRTLCLNDSKVSRGIWLVSSL 622


>05_07_0260 -
           28739035-28739085,28739316-28739596,28740545-28740572,
           28740653-28740749,28741216-28741272,28741353-28741415,
           28741533-28741621,28741779-28741865,28742041-28742162,
           28742245-28742500,28742595-28742744,28743120-28743278,
           28743820-28743892,28743968-28744024,28744115-28744243,
           28744469-28744560,28745220-28745252
          Length = 607

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 86  AILLSSAELVLLIGQFPTLS-TNIVMLTTVSWNFFKFLLWYCILIIAFALS 235
           A+L + AE+ +++  F     TNI   T  S+N   FL  Y +LIIA AL+
Sbjct: 99  AVLRAMAEVGIILVYFYICDRTNIFPETKKSYNRDLFLFLYILLIIASALT 149


>01_07_0150 +
           41508546-41508636,41509384-41510343,41511082-41511555,
           41511642-41511736
          Length = 539

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 766 KSKPF*LGIPARPIDPKTLEKGPGGGCFRSG 858
           K+KP    +P +P + + LEKG GGG  R+G
Sbjct: 510 KAKPV---VPKKPREDEDLEKGGGGGGGRAG 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,290,854
Number of Sequences: 37544
Number of extensions: 504077
Number of successful extensions: 1152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)