Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31019
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_563| Best HMM Match : Ank (HMM E-Value=0)                           47   2e-05
SB_17686| Best HMM Match : Ank (HMM E-Value=3.2e-29)                   34   0.13 
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)                 32   0.53 
SB_33384| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_51338| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_563| Best HMM Match : Ank (HMM E-Value=0)
          Length = 753

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +2

Query: 74  LSAVAILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFKFLLWYCILIIAFALSFYTLFR 253
           + A++I  +   LVL I +FP     +VM T +   F  F   + + IIAFAL+F+TLF 
Sbjct: 692 VGAISIWSAWMSLVLFIRKFPLFGIYVVMFTDILNTFLMFSTIFLLFIIAFALAFFTLFS 751

Query: 254 QK 259
            K
Sbjct: 752 AK 753


>SB_17686| Best HMM Match : Ank (HMM E-Value=3.2e-29)
          Length = 761

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +2

Query: 83  VAILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFKFLLWYCILIIAFALSFYTLFRQK 259
           V+I  +   LVL + +F  +   I ML  V+   F+  + + + I+AFA++F  L  ++
Sbjct: 480 VSIFFTYFNLVLFLRRFEMIGLYIAMLLGVAKTVFRAFMAFSVFILAFAVAFSVLLNKQ 538


>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +2

Query: 71  QLSAVAILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFKFLLWYCILIIAFALSFYTL 247
           Q  AV++  S   L+L   +       ++ML ++     K L+ + + ++AF ++FY L
Sbjct: 770 QFGAVSLFFSWLNLILYFRKLSFYGQYVIMLASIFVTLAKVLMLFFLFVMAFGVTFYIL 828


>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
          Length = 929

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +2

Query: 41  SKSATESTKQQLSAVAILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFKFLLWYCILII 220
           + +A++S   ++SAV I+     L+  +  F TL   IVM+  +  +  KF + Y     
Sbjct: 350 NNAASQSLHPKVSAVGIIFIWLRLMKSVRAFATLGPFIVMIGHIIDDTLKFAVLYFAFYF 409

Query: 221 AFALSFYTLF 250
            +  +F+ +F
Sbjct: 410 PYICAFWIIF 419


>SB_33384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 89  ILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFKFLLWYCILIIAFALSFYTLFRQK 259
           +LL     +L + +       I M   V  +  K L+ + + I+AFAL+FY L +++
Sbjct: 1   MLLCFTNAILFLRRVHVFGLYISMYIEVLKSLIKVLMVFILFILAFALAFYCLLKEQ 57


>SB_37572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -3

Query: 237 KLNAKAIMRMQYQSKNLKKFHETVVNMTMLVDSVGN---CPISRTNSADDNKIATAESCC 67
           K+    +  ++Y   NLK  H  V    +LVD  GN   C    +    D+   T ++ C
Sbjct: 132 KIAVSVVSALEYLHSNLKVIHRDVKPSNILVDERGNFKLCDFGISGQLVDSLAKTVDAGC 191


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 860  QPLRKQP-PPGPFSRVFGSIGRAGIPN*NG 774
            + LR  P PPGP S V G +G  G P   G
Sbjct: 3401 ESLRGPPGPPGPASTVAGPVGTRGFPGLKG 3430


>SB_51338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +2

Query: 647 KTLKSHQT*NPFFNGKSFAKRDLVGFPHFLAGNIKYLVNPNPNHFNWGYPHGRLTQRPLK 826
           KTLK+H T             +L G P  + G +  +V  N +H ++GY +G +T  PLK
Sbjct: 669 KTLKTHDT---------CGVHNLHGMPGIVGGIVGAIVAANASHASYGY-NGYVTS-PLK 717

Query: 827 RDP 835
            +P
Sbjct: 718 GNP 720


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,949,148
Number of Sequences: 59808
Number of extensions: 567026
Number of successful extensions: 1306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)