Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31019
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    42   4e-04
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    42   4e-04
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    32   0.62 
Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U97552-1|AAB52866.2|  109|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    30   2.5  
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    30   2.5  
U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine rece...    29   3.3  
AC084153-13|AAK84583.1|  123|Caenorhabditis elegans Hypothetical...    29   4.4  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    29   5.8  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical protein
            C29E6.2 protein.
          Length = 1193

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +2

Query: 20   VTIWIVFSKSATESTKQQ----LSAVAILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFF 187
            +T++     SAT   +Q     L+A+ I      L+ +I + P     +VM   +   FF
Sbjct: 897  ITVYDFSECSATSGVRQNWQWILAALCIFFGWINLLFMIRKMPRFGIFVVMFVDIVKTFF 956

Query: 188  KFLLWYCILIIAFALSFYTLFRQK 259
            +F   + + IIAF+ SFY + + +
Sbjct: 957  RFFPVFVLFIIAFSSSFYVILQNR 980


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient receptor
            potential subfamilyA-1 protein.
          Length = 1206

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +2

Query: 20   VTIWIVFSKSATESTKQQ----LSAVAILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFF 187
            +T++     SAT   +Q     L+A+ I      L+ +I + P     +VM   +   FF
Sbjct: 910  ITVYDFSECSATSGVRQNWQWILAALCIFFGWINLLFMIRKMPRFGIFVVMFVDIVKTFF 969

Query: 188  KFLLWYCILIIAFALSFYTLFRQK 259
            +F   + + IIAF+ SFY + + +
Sbjct: 970  RFFPVFVLFIIAFSSSFYVILQNR 993


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 20  VTIWIVFSKSATESTKQQLSAVAI---LLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFK 190
           + +W++   +   S  Q++   AI   LLS+  + L  G   T+      L    +   K
Sbjct: 227 LVLWMLVESAIVGSDMQEVIGTAISFYLLSNGVIPLWAGVLITICDTFTFLFLEKYGVRK 286

Query: 191 FLLWYCILIIAFALSF 238
           F  ++C LI   A++F
Sbjct: 287 FEAFFCFLITCMAITF 302


>Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical
           protein C09H10.7 protein.
          Length = 325

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 354 DHRHVNWRIRCIFHKIQYISLNESHYIH 437
           D +H ++ + C  HK+Q+ISL + H+ H
Sbjct: 95  DTKHRDYLVVCGEHKLQFISLPDYHFYH 122


>U97552-1|AAB52866.2|  109|Caenorhabditis elegans Hypothetical
           protein W05H7.2 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 166 NGFVEFLQIFTLVLHSHNSFCVKFLHTIQAENEED 270
           N F+ FLQ F+   H +  FC+K    I+  NE+D
Sbjct: 23  NFFLHFLQFFSFFFHDYRLFCIK----IEKINEKD 53


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 562 LTSRACLSVARKTHSRPSKCWSC---WPFNIQNFKISSNLKPFF*WKILC 702
           L+ R+C++VA +    PSK W C    P + Q + ++ +   F    I+C
Sbjct: 757 LSERSCVTVASEAAGDPSKWWDCVCPLPCSNQEYSVTWSKANFVNLPIIC 806


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 20  VTIWIVFSKSATESTKQQL--SAVAI-LLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFK 190
           + +W++   +   S  Q++  +A+AI LLSS ++ LL+G   T+      L    +   K
Sbjct: 68  IILWLMIEIAIVCSDMQEVIGTAIAIYLLSSGKIPLLVGVLITILDTFTFLFIDRYGIRK 127

Query: 191 FLLWYCILIIAFALSF 238
               +  LI   A+SF
Sbjct: 128 LEFIFVALISTMAISF 143


>U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein19 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 527 FGVCPNSCVSLTARPLSKLKSTMGIMKTN 441
           FG+  N  V LTAR +S ++S+ GI+  N
Sbjct: 18  FGLITNIIVLLTARKMSSMRSSFGIITKN 46


>AC084153-13|AAK84583.1|  123|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.1 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +2

Query: 74  LSAVAILLSSAELVLLIGQFPTLSTNIVMLTTVSWNFFKFLLWYCILIIAFALSFYTLF 250
           ++   IL+    L+ +  + PT + +   L    W FF F +   I++I F + +Y+ +
Sbjct: 43  IAVFIILVIIIVLIFVFRKMPTPTESSSTLRKTLWWFFIFYVLLKIVVIVFIIGYYSKY 101


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 186 KKFHETVVNMTMLVDSVGNCPISRTNSADDNK-IATA 79
           +K+  +  N+   +D++GN P+ + +  DDNK I TA
Sbjct: 549 EKYRPSYDNLPTWMDAIGNPPLVKYHMGDDNKTIVTA 585


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 527 FGVCPNSCVSLTARPLSK 474
           F VC N+CVS TA PL K
Sbjct: 41  FNVCFNTCVSYTALPLPK 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,246,666
Number of Sequences: 27780
Number of extensions: 448308
Number of successful extensions: 1137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)