Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31019
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote...    32   0.58 
At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing ...    29   5.4  
At5g52280.1 68418.m06488 protein transport protein-related low s...    28   9.5  
At1g60960.1 68414.m06862 metal transporter, putative (IRT3) iden...    28   9.5  

>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 691

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 528 LVGHISRIKLISYIESVLIGSAKNAFTSIKVLVVLAVQHSKL 653
           L+G++  +++I    + L GS    F S+K + VLA+Q+++L
Sbjct: 135 LIGNLDNLQVIQLCYNKLSGSIPTQFGSLKKITVLALQYNQL 176


>At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing
           protein finger protein rolB, Arabidopsis thaliana,
           PID:g1359493
          Length = 232

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 474 IKKHNGYHENEHDEYN 427
           +  HNGYH N+ D+YN
Sbjct: 185 VDNHNGYHMNQVDQYN 200


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 237 KLNAKAIMRMQYQSKNLKKFHETVVNMTMLVDSVGNCPISRTNSADDNKIATAESCCFV 61
           K   KA+ ++Q+Q+  + K  +T + ++++ D VG        S     I + E+  +V
Sbjct: 9   KNKIKAVFKLQFQATQVPKLKKTALMISLVPDDVGKPTFKLEKSEVKEGICSWENPIYV 67


>At1g60960.1 68414.m06862 metal transporter, putative (IRT3)
           identical to putative metal transporter IRT3
           [Arabidopsis thaliana] gi|17385796|gb|AAL38438; similar
           to iron-regulated transporter 1 [Lycopersicon
           esculentum] gi|9716481|gb|AAF97509; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 425

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 674 NPFFNGKSFAKRDLV--GFPHFLAGNIKYLVNPNPNHFNW 787
           N F   K+FA   ++  GF H LAG  + L NP    F W
Sbjct: 96  NLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPDFPW 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,047,192
Number of Sequences: 28952
Number of extensions: 415852
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)