BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS31017 (862 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 196 3e-51 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 192 5e-50 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 89 1e-18 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 53 5e-08 SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 31 0.21 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.28 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.37 SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 28 2.0 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 2.0 SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 27 4.5 SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.0 SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 26 6.0 SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 6.0 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.0 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.9 SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 7.9 SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 26 7.9 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 196 bits (479), Expect = 3e-51 Identities = 87/125 (69%), Positives = 103/125 (82%) Frame = +2 Query: 260 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 439 NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+P Sbjct: 304 NQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEP 363 Query: 440 PTVVPGGDLAKVQRAVCMLSNTNPSPKLGARLDQQVSTSCYAKRAFVHWYVGEGMKEGEF 619 P VPG +AKV RAVCMLSNT + +RLD + Y+KRAFVHWYVGEGM+EGEF Sbjct: 364 PQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDL-MYSKRAFVHWYVGEGMEEGEF 422 Query: 620 SEARE 634 SEARE Sbjct: 423 SEARE 427 Score = 154 bits (373), Expect = 2e-38 Identities = 73/104 (70%), Positives = 82/104 (78%) Frame = +3 Query: 3 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYA 182 RRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+ Sbjct: 218 RRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYS 277 Query: 183 PVISAEKAYHEQLSVAEITNACFEPPTRW*NATPVMASTWLAVC 314 P++SA KA+HE SV EITN CFEP + P ++A C Sbjct: 278 PIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RTGRYMATC 320 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 192 bits (468), Expect = 5e-50 Identities = 86/125 (68%), Positives = 101/125 (80%) Frame = +2 Query: 260 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 439 NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +P Sbjct: 300 NQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRP 359 Query: 440 PTVVPGGDLAKVQRAVCMLSNTNPSPKLGARLDQQVSTSCYAKRAFVHWYVGEGMKEGEF 619 P + G ++AKV RAVCMLSNT + +RLD + Y+KRAFVHWYVGEGM+EGEF Sbjct: 360 PQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL-MYSKRAFVHWYVGEGMEEGEF 418 Query: 620 SEARE 634 SEARE Sbjct: 419 SEARE 423 Score = 157 bits (380), Expect = 2e-39 Identities = 74/104 (71%), Positives = 84/104 (80%) Frame = +3 Query: 3 RRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYA 182 RRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYA Sbjct: 214 RRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYA 273 Query: 183 PVISAEKAYHEQLSVAEITNACFEPPTRW*NATPVMASTWLAVC 314 P++SA KA+HE SV EITN CFEP + P A ++A C Sbjct: 274 PIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RAGRYMATC 316 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 88.6 bits (210), Expect = 1e-18 Identities = 47/130 (36%), Positives = 72/130 (55%) Frame = +2 Query: 239 KRMLRAANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFK 418 ++M A N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P Sbjct: 291 QQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVL 350 Query: 419 VGINYQPPTVVPGGDLAKVQRAVCMLSNTNPSPKLGARLDQQVSTSCYAKRAFVHWYVGE 598 + PP DL + + + N+ ++ RL Q S + + ++AF+HWY GE Sbjct: 351 KAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFS-AMFRRKAFLHWYTGE 401 Query: 599 GMKEGEFSEA 628 GM E EF+EA Sbjct: 402 GMDEMEFTEA 411 Score = 74.1 bits (174), Expect = 2e-14 Identities = 31/81 (38%), Positives = 52/81 (64%) Frame = +3 Query: 12 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 191 L I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ Sbjct: 215 LKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLA 274 Query: 192 SAEKAYHEQLSVAEITNACFE 254 + + + +SV E+T F+ Sbjct: 275 AIGSSSFQAVSVPELTQQMFD 295 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 53.2 bits (122), Expect = 5e-08 Identities = 22/58 (37%), Positives = 35/58 (60%) Frame = +3 Query: 12 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 185 L + PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P Sbjct: 218 LHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275 Score = 42.7 bits (96), Expect = 6e-05 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 2/131 (1%) Frame = +2 Query: 239 KRMLRAANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF 415 +R+L NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASI 356 Query: 416 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTNPSPKLGAR-LDQQVSTSCYAKRAFVHWYV 592 +V ++ + P + ++ + ML+N L R LDQ + AF+ Y Sbjct: 357 QVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQY--DRLRKRNAFLEQYK 409 Query: 593 GEGMKEGEFSE 625 E + E + +E Sbjct: 410 KEAIFEDDLNE 420 >SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 474 Score = 31.1 bits (67), Expect = 0.21 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +1 Query: 145 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSRQPDGEMRPP 285 LTP + S +S + +S +R ++N+ PS + +H+SS Q RPP Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPP 174 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 30.7 bits (66), Expect = 0.28 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 321 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 455 VV P + RP++P P LS V PV+ V + PP P Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 30.3 bits (65), Expect = 0.37 Identities = 35/145 (24%), Positives = 50/145 (34%) Frame = +3 Query: 276 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 455 +TPV ++ CT TS P T + S P +N +T S TS P Sbjct: 437 STPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTT 494 Query: 456 EATWPRFNVPSACCPTPTHRRSLGLALTNKFRPHVTPSVLSCTGTSVKV*RKESSPKPVK 635 T +VP P + ++ + P T + T TSV + P+ Sbjct: 495 NCT-TSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN--CTTSTSVLYTSTPVTSTPLA 551 Query: 636 ELGCPSKGGARYPIWP**VSRITIS 710 C + Y P S TIS Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTIS 576 >SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizosaccharomyces pombe|chr 3|||Manual Length = 849 Score = 27.9 bits (59), Expect = 2.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +3 Query: 753 WRLPTLIALQAKFPLFGQIGGN*RKRARQPDLALFP 860 WRLP ++ + F GG+ R+R ++ DL ++P Sbjct: 729 WRLPKILVIHLN--RFSGHGGDLRRRRKRRDLVVYP 762 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 3227 Score = 27.9 bits (59), Expect = 2.0 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 361 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGSKHAF 239 S G +LGY ++ A++V+A + V HL+ G AF Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAF 447 >SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosaccharomyces pombe|chr 1|||Manual Length = 556 Score = 26.6 bits (56), Expect = 4.5 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -1 Query: 646 QPSSFTGFGELSFLHTFTDVPVH 578 +P SF G + F TFTD P++ Sbjct: 418 RPCSFNGVHQPKFTETFTDSPIY 440 >SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 26.2 bits (55), Expect = 6.0 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -3 Query: 338 WVRRHHGTAYSKPCTCHDGGRISPSGWRL 252 W R H Y+KPC DGG + W++ Sbjct: 16 WRRDHPFGFYAKPCKSSDGG-LDLMNWKV 43 >SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Schizosaccharomyces pombe|chr 2|||Manual Length = 651 Score = 26.2 bits (55), Expect = 6.0 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 102 ALNVDLTEFQTNLVPYPRIHFPLVT--YAPVISAEKAYHEQLSVAEITNACFEPPTRW*N 275 A +V++ E +TN +P HFP T AP S EK + T + T+ N Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTEEVAPA-SEEKPATGPAEESTSTQNVEQASTQNDN 426 Query: 276 ATPV 287 TP+ Sbjct: 427 GTPI 430 >SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 429 Score = 26.2 bits (55), Expect = 6.0 Identities = 7/17 (41%), Positives = 13/17 (76%) Frame = -3 Query: 488 RRHVEPWPSRLRAPRWV 438 +R+ + WPS++ P+WV Sbjct: 153 QRYSDSWPSKITLPKWV 169 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 26.2 bits (55), Expect = 6.0 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Frame = +3 Query: 327 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 497 TS P PS P SKP S ++ V PV + +S+ + P P A P VPS Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041 Query: 498 PTPTHRRSLGLALTNKFRPHVTPSV 572 P P + + ++ P P V Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPV 1066 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 26.2 bits (55), Expect = 6.0 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = +3 Query: 357 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 443 +LP KPS+ +++S V+P S STTS+P Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 25.8 bits (54), Expect = 7.9 Identities = 16/60 (26%), Positives = 24/60 (40%) Frame = +3 Query: 354 PSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPTHRRSLGLA 533 P++P+ P S QP S T+ P + +VPS P P H + L+ Sbjct: 1487 PAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALS 1546 >SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 25.8 bits (54), Expect = 7.9 Identities = 14/57 (24%), Positives = 28/57 (49%) Frame = -2 Query: 678 KLGTGPPLWRGSQVPSRASENSPSFIPSPTYQCTKARLA*HEVETCWSRRAPSFGDG 508 K+ + P+++ +Q R + + P P P Y C + H ++ C + P++ DG Sbjct: 155 KMASATPIYKPNQ--RRIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPNY-DG 208 >SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 205 Score = 25.8 bits (54), Expect = 7.9 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 680 PNWVPGPPFGGAAKFLHGLRRTLLPSYLHRRTSARKHAWRNMRSK 546 P+ V PP +G RRT S RRT ++ +RN R K Sbjct: 74 PSPVTRPPVAVGGGIFYGARRTRNRSQTQRRT-LLENGFRNSRKK 117 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,126,093 Number of Sequences: 5004 Number of extensions: 99004 Number of successful extensions: 345 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 309 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 340 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 428468660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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