Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31017
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 405 QPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPT-HRRSLGLALTNKFRPHVTPSVL 575
           +PV  S +TT+ P    ++T  R ++ S C  T + H++ L   L  + +   T  ++
Sbjct: 320 KPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGII 377


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -3

Query: 674 WVPGPPFGGAAKFLHGLRRT--LLPSYLHRRTSARKHAWRNMRSKLVGQGEPQ 522
           W+  P  G A    H       L PSY  +  + + H W+  R K     +P+
Sbjct: 389 WIVPPISGSATPVFHQEMALYYLKPSYDAQEPAWKTHVWKKGRDKKSTSKKPR 441


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 587 YVGEGMKEGEFSEAREGTWLPLQRGGPVPNLALISESYYN 706
           Y  +      FS+  + TWLP+       NLA     YY+
Sbjct: 426 YQWDNSTSAGFSQTNK-TWLPVNENYKSLNLAAQKREYYS 464


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 735 VTWEKPWRLPTLIAL 779
           V W  PW L TLI L
Sbjct: 58  VEWSGPWILVTLIVL 72


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 323 HGTAYSKPCTCHDGGRISPSGWRLE 249
           H   ++ PC CH  G+     W L+
Sbjct: 35  HIRTHTLPCKCHLCGKAFSRPWLLQ 59


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 406 NRFQGRYQLPA 438
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 367 QNQAYYPIRRLVSNRFQGRYQ 429
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 488 CMLSNTNPSPKLGARLDQQVSTSC 559
           C++   +P P +  RL +  S  C
Sbjct: 196 CLVGTWSPDPAINRRLKETYSNMC 219


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 488 CMLSNTNPSPKLGARLDQQVSTSC 559
           C++   +P P +  RL +  S  C
Sbjct: 196 CLVGTWSPDPAINRRLKETYSNMC 219


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 488 CMLSNTNPSPKLGARLDQQVSTSC 559
           C++   +P P +  RL +  S  C
Sbjct: 196 CLVGTWSPDPAINRRLKETYSNMC 219


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 627 ASENSPSFIPSPTYQC 580
           AS  SP+  PSP  QC
Sbjct: 736 ASPRSPNASPSPAEQC 751


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 311 MLYRGDVVPKDVNAAIAT 364
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 115 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSRQPDGEMRPPS 288
           TSP+S +  C++P++ S  S +  S+       N+  S  S+ + S+       +PP+
Sbjct: 582 TSPNSAVRKCMSPINGSGASGS-GSAENLSSGSNNQTSSASRENTSNTTSMESFKPPT 638


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,554
Number of Sequences: 438
Number of extensions: 7962
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)