Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31016
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   1.00 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   7.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   7.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.3  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 31  CAL*GSPRWWSPRSCSL 81
           C + G+P  W P SC L
Sbjct: 484 CVVEGNPHCWVPHSCKL 500


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 715 T*GRLPPVW 741
           T GRLPPVW
Sbjct: 216 TEGRLPPVW 224


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 690 LMPAPAVGNLRQVAPGVG 743
           LMP+P V      +PG G
Sbjct: 85  LMPSPTVSGSEMSSPGAG 102


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 690 LMPAPAVGNLRQVAPGVG 743
           LMP+P V      +PG G
Sbjct: 85  LMPSPTVSGSEMSSPGAG 102


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 816 GGPPAGKQP 842
           GGPP+G QP
Sbjct: 66  GGPPSGGQP 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,179
Number of Sequences: 336
Number of extensions: 3316
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)