Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31016
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084...    31   1.2  
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532...    31   1.5  
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    29   4.7  
01_01_0840 - 6557931-6558377                                           28   8.2  

>02_04_0415 +
           22706964-22707072,22707784-22708077,22708304-22708416,
           22708504-22709002,22709106-22709144,22709228-22709515,
           22709766-22709905,22710468-22710960,22711082-22711356
          Length = 749

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 642 PPLYLTMPAATDSD*VLMPAPAVGNLRQVAPG 737
           PP    MP  TDSD    P P V N+   APG
Sbjct: 692 PPAMAPMPLLTDSDVAESPLPPVKNVTAPAPG 723


>08_01_0606 -
           5321751-5321819,5321950-5322192,5322279-5322377,
           5322463-5322942,5323069-5323167,5323306-5323427,
           5323517-5323635,5323734-5323801,5323889-5324074,
           5324169-5324244,5324339-5324418,5324505-5324561,
           5324980-5325122,5325208-5325352,5325652-5325813,
           5325893-5326078,5326263-5326355,5326437-5326597,
           5327005-5327109,5328263-5328278
          Length = 902

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 587 ILLPLPQPMGGSYGGLYAAPAVSN 658
           IL  LP+P GG YG  Y+ PA+++
Sbjct: 14  ILTTLPKPGGGEYGKFYSLPALND 37


>01_01_0668 -
           5109476-5110112,5110196-5110439,5110519-5110917,
           5111390-5111668,5111886-5112257,5112371-5112475,
           5112832-5112909,5112990-5113199,5113287-5113406,
           5113508-5113606,5113685-5113750,5113914-5114141,
           5114216-5114521,5115324-5115381
          Length = 1066

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 642 PPLYLTMPAATDSD*VLMPAPAVGNLRQVAPGVG*I---TQLPALRPANSNWVPWVCQRT 812
           PP+ LT PA T    V  P  AV N   V PG   +    Q PA   A +  +P V   +
Sbjct: 127 PPVELTPPAPTHVAPVAPPQAAVENPAPVLPGTPALLPSVQAPAPSVARNPNLPIVQPPS 186

Query: 813 *GGPPAGKQPLG 848
              PP+  +P+G
Sbjct: 187 VNNPPS--RPIG 196


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 200 RRQRCGHRERCEL 162
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,055,337
Number of Sequences: 37544
Number of extensions: 465405
Number of successful extensions: 1183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)