Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31016
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               32   0.51 
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 31   1.2  
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_52737| Best HMM Match : B_lectin (HMM E-Value=7.6)                  29   6.3  
SB_57120| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)                 28   8.3  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 273 CYWPSIFVRRCTIVRLCRISGCDQDHFS 356
           C  P+   RRC   R C +SGC + H S
Sbjct: 785 CLLPNHISRRCKTYRACLVSGCSEKHHS 812


>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 273 CYWPSIFVRRCTIVRLCRISGCDQDHFS 356
           C  P+   RRC   + C +SGC + H S
Sbjct: 154 CLLPNHISRRCKTYKACLVSGCSEKHHS 181


>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 451 RRWLEHREQSMLRKMVIHERLWTSKKILRKQLEK 350
           R W+  +E   + + +    LW S+KIL+ QLEK
Sbjct: 169 RSWISEQELEDIDEEIRRLELWLSRKILKHQLEK 202


>SB_52737| Best HMM Match : B_lectin (HMM E-Value=7.6)
          Length = 187

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 824 GPALGSLANPGDPIRISRP 768
           G  L +LANPGDP+ + RP
Sbjct: 61  GEGLHALANPGDPLVLERP 79


>SB_57120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 842 RLFTRRGPALGSLANPGDPIRISRP 768
           RL  RR  A   + NPGDP+ + RP
Sbjct: 38  RLLARRRNAAKLIRNPGDPLVLERP 62


>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
          Length = 330

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 215 RLEQHRRQRCGHRERCELSKKRPKTQ 138
           R   H R+ C +R+R  L+ KRPKT+
Sbjct: 192 RHSHHYRRICRYRQRRPLTPKRPKTR 217


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 7    CTPS*SLLCAL*GSPRWWSPRSCSLGLQPRYRGSCCGN*NHQSSC 141
            C PS    C +  SP    P+SC     P     CC N +  + C
Sbjct: 1781 CLPSCPSTCCIKNSPPVVCPKSCETTCTPDCPVMCCKNSSPATEC 1825


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,166,273
Number of Sequences: 59808
Number of extensions: 485350
Number of successful extensions: 1586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)