Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31016
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    30   1.7  
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK...    30   2.2  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    29   5.2  
At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family pr...    28   6.8  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    28   9.0  

>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 587 ILLPLPQPMGGSYGGLYAAPAVSN 658
           IL  LP+P GG YG  Y+ PA+++
Sbjct: 107 ILTSLPKPGGGEYGKYYSLPALND 130


>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 505

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -2

Query: 831 PPGARLRFFGKPR---GPN*N*PALRQEAALFSPHRGQPALSYPQQG 700
           P G    F+GKPR   GPN   P+  Q         G  + SYP QG
Sbjct: 408 PAGPSHNFYGKPRGPPGPNRYPPSGNQSGGYNQSRGGYSSGSYPPQG 454


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 345 LGHNRRCGISVRWCSGVRICWASS 274
           +G +R CG  VRW +G  +CW ++
Sbjct: 231 VGEDRGCG--VRWSNGTVVCWGNN 252


>At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 458

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 460 RSMRRWLEHREQSMLRKMVIHERLWTSKKILRKQLEKW 347
           R +  WL+H       K V+  RLW    ++   + +W
Sbjct: 100 RYITEWLKHERTCPKTKQVLSHRLWIPNHLISDLITQW 137


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
            NUF1 protein (Spindle poly body spacer protein SPC110)
            (SP:P32380) {Saccharomyces cerevisiae}; similar to Myosin
            heavy chain, smooth muscle isoform (SMMHC) (SP:P35749)
            {Homo sapiens}
          Length = 1004

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 606  SPWVVLTEDFTLPPLYLTMPAATDSD 683
            +P ++   DF  P L+   PAATD+D
Sbjct: 928  NPTIIADGDFRTPSLFYLGPAATDAD 953


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,343,202
Number of Sequences: 28952
Number of extensions: 318618
Number of successful extensions: 828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)