Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31012
         (828 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    97   6e-19
UniRef50_Q3CH99 Cluster: Ku; n=2; Thermoanaerobacter ethanolicus...    38   0.31 

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 96.7 bits (230), Expect = 6e-19
 Identities = 46/53 (86%), Positives = 46/53 (86%)
 Frame = -3

Query: 160 LADPADFVVPQSINKRPKLLYKINLKQTKRIRPTEDTSKEKQNCNFYFIPSIF 2
           LADPADFVVPQSINKRPK LYKINLKQTK IR T DTSKEKQNC FY IP IF
Sbjct: 22  LADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIF 74


>UniRef50_Q3CH99 Cluster: Ku; n=2; Thermoanaerobacter
           ethanolicus|Rep: Ku - Thermoanaerobacter ethanolicus
           ATCC 33223
          Length = 270

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 217 TLDCVDSKYKSN*SIIYYELADPADFVVPQSINKRPKLLYKINLKQTKRIRPTEDTSKEK 38
           T+D VD         IYY   D   F+VP+ I  +P +L + ++K+TKR+   +   + K
Sbjct: 89  TIDIVDFTDIGQIDPIYY---DKTYFIVPEDIGTKPYVLLRDSMKETKRVAIAKVVIRSK 145

Query: 37  QN 32
           QN
Sbjct: 146 QN 147


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 858,061,412
Number of Sequences: 1657284
Number of extensions: 18072870
Number of successful extensions: 34870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34863
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)