Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31012
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   1.9  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   4.3  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    26   5.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.7  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    25   9.9  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 76  LFVLSLFYTKA*VFYLSIEALRSLPGQLVRN 168
           +F L L +T+  +FYLS+  L   P +++RN
Sbjct: 321 IFTLLLTFTQLTIFYLSLNCLIENPYRMLRN 351


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
 Frame = +2

Query: 575 WLTASYSSVNGTILL-----GKYLXXXXXXXXXXXWRCEWHTLTGFS 700
           W  ASYS   GT +L     G              W C W  ++GFS
Sbjct: 86  WFPASYSLTVGTFILIAGRLGDIYGHKKMFVLGYIWFCIWSLISGFS 132


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 794 YGKFTIRVLTPLWEGSPKYQNVLWSTRYMYHR 699
           Y K  +R+L+ L E  PK        RY+Y+R
Sbjct: 468 YPKIAVRILSILGEEGPKASEPTRFIRYIYNR 499


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 666 HFLTTRQWRTLLRYFPNKIVPLTDE*DAVSHFSTTFVDL 550
           H +  +++  + RYF  + VPL D   +V HF  T  D+
Sbjct: 791 HEIRLQRFDNVYRYFICRAVPLRDCTGSVLHFFGTMTDV 829


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 712 YLVDHKTFWYFGDP 753
           YLVDH  F+Y  DP
Sbjct: 218 YLVDHSVFFYLMDP 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,660,329
Number of Sequences: 5004
Number of extensions: 80784
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)