Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31012
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0067 - 17013606-17013614,17013912-17013998,17014126-170147...    29   3.4  
09_01_0082 - 1182976-1182989,1183044-1183347,1184259-1184357,118...    29   4.5  
08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799     28   7.9  

>03_04_0067 -
           17013606-17013614,17013912-17013998,17014126-17014746,
           17015037-17015174,17015891-17016013,17016127-17016204
          Length = 351

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 706 YIYLVDHKTFWYFGDPSHNGV 768
           Y YL  H +F   G+PSH GV
Sbjct: 76  YAYLTTHNSFAIVGEPSHTGV 96


>09_01_0082 -
           1182976-1182989,1183044-1183347,1184259-1184357,
           1184458-1184595,1184698-1184820,1184962-1185030
          Length = 248

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 706 YIYLVDHKTFWYFGDPSHNGV 768
           Y +LV H +F   G+PSH GV
Sbjct: 73  YSWLVTHNSFSIIGEPSHTGV 93


>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
          Length = 188

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 680 HTLTGFSDGTYT*WTIKHFGILGTPP 757
           HT+  FSDG++   TI+ FG+LG  P
Sbjct: 115 HTMV-FSDGSFAGSTIEVFGLLGVKP 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,418,827
Number of Sequences: 37544
Number of extensions: 472908
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)