Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31012
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)                   30   2.0  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               30   2.0  
SB_19515| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06)                 29   3.5  
SB_14398| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)                    28   8.0  

>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 711 YVPSLNPVKVCHSHLHFLTTRQWRTLLRYFPNKIVPLTDE*DAVSHFSTTFV--DLRFAN 538
           + P+LN + + H+ +     ++  TLL+ F NK+  L    +++      ++   LR  N
Sbjct: 651 HAPNLNTLLITHNDIGLFGCKEVLTLLQNFGNKLTKLDLTFNSIGDEEAKYICEALRHEN 710

Query: 537 CEMT 526
           C++T
Sbjct: 711 CKLT 714


>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
          Length = 689

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 808 GLRLYTENSPLGYLPHYGRGPQNTKMFYGPL-GICTIAEPS*GMPF 674
           G++  T N P+   PHY   P N  M++ P  G CT      GMPF
Sbjct: 554 GIKATTANCPIEMQPHY--NPANGAMYFAPSDGNCT-KPTHFGMPF 596


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 796 YTENSPLGYLPHYGRGPQNTKMFYGPLGICTIAEPS*GMPFTPPFFNDTSM 644
           Y   +P+  LPH   GPQ T  +     + T++    G   TPP+ +  S+
Sbjct: 161 YGHTAPVLTLPHADNGPQATPSYGHSGSVLTLSHADNGPKATPPYGHSGSV 211



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 796 YTENSPLGYLPHYGRGPQNTKMFYGPLGICTIAEPS*GMPFTPPFFNDTSM 644
           + EN P   LPH   GPQ T  +     + T+     G   TP + +  S+
Sbjct: 139 HVENGPQDTLPHRNSGPQVTPPYGHTAPVLTLPHADNGPQATPSYGHSGSV 189


>SB_19515| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06)
          Length = 470

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -1

Query: 711 YVPSLNPVKVCHSHLHFLTTRQWRTLLRYFPNKIVPLTDE*DAVSHFSTTFVD--LRFAN 538
           + P+LN + + ++++  ++ ++  TLL+ F NK+  L    +++      ++   LR  N
Sbjct: 218 HAPNLNTLLMPNNNIGLISCKEVLTLLQNFGNKLTKLYLTVNSIGDEGAKYIGEALRHEN 277

Query: 537 CEMT 526
           C++T
Sbjct: 278 CKLT 281


>SB_14398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 711 YVPSLNPVKVCHSHLHFLTTRQWRTLLRYFPNKIVPLTDE*DAVSHFSTTFVD--LRFAN 538
           + P+LN + + H+ +     ++  TLL+ F NK+  L    +++      ++   L   N
Sbjct: 10  HAPNLNTLLITHNDIGLFGCKEVLTLLQNFGNKLTKLDLPFNSIGDEGAKYIGEALGHEN 69

Query: 537 CEMT 526
           C++T
Sbjct: 70  CKLT 73


>SB_14757| Best HMM Match : DUF468 (HMM E-Value=6.5)
          Length = 198

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 451 HRGYSGQTWEMLKPPI*TEKNVFSPRHFTIR-KTKVNKC 564
           +R    QT++     I T+ +V +PRH  +R +TK  KC
Sbjct: 47  NRRSRNQTYKYTYTQIDTQMHVHAPRHSNVRTRTKTRKC 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,771,818
Number of Sequences: 59808
Number of extensions: 581829
Number of successful extensions: 1158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)