Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31012
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical p...    32   0.58 
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK1290.9 protein.
          Length = 360

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -1

Query: 666 HFLTTRQWRTLLRYFPNKIVPLTDE*DAVSHFSTTFVDL 550
           H + T QW+TL ++F ++ V ++   D + HF+T  VDL
Sbjct: 238 HLVNTEQWKTL-KHFISECVEISIPIDHLLHFTTMKVDL 275


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 228 EYTTFSYVSNVNQKVTITALMYADVPSRGHFLLFTKVMLVINY 356
           +YTTF  ++ + +     +L+Y+ +P+RG   L+ K+ L + +
Sbjct: 417 DYTTFKMLNKIFEITEQASLLYSSIPARGRGPLWYKIWLDVRH 459


>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 570 STTFVDLRFANCEMTWRKYI-FFCSNWRFEHFPCLTGVSSVLFILK*YY 427
           S  F    F      W  YI +FCS + F    C TGVSSVL  LK  Y
Sbjct: 187 SVCFCPQMFIADPRQWEIYIPYFCSIF-FGGICCFTGVSSVLTCLKIVY 234


>U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical
           protein F54H5.3 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 199 SKYKSN*SIIYYELADPADFVVPQSINKRPKLLYKINLKQTKRIRPTEDTSK 44
           +KY+SN   I   +  P DF   + I K+P  L      + K +RP +   K
Sbjct: 93  TKYQSNHQFIVQAMPSPGDFADRKFIWKQPNFLGIFTNTRVKTMRPAQSLPK 144


>Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical
           protein T02G6.1 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 525 WRKYIFFCSNWRFEHFPCLTGVSSV--LFILK*YYIFFKLLYK 403
           WRK   F   WR++ FP  T + S+  +F  +  Y +F++L K
Sbjct: 28  WRKISDFFFGWRYKGFP-KTNLQSLFSVFCSQNIYFYFEILKK 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,331,234
Number of Sequences: 27780
Number of extensions: 460367
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)