Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31012
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 243 KMSCILNSELSTALIQNTNQIKVLFI 166
           K S +LNSE   + ++++N +KVL I
Sbjct: 100 KYSNMLNSEKHASFLKHSNIVKVLMI 125


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 207 QSRVHCLEYTTFSYVSNVNQKVTITALM 290
           ++R  C+ Y  F+Y  N+N       +M
Sbjct: 490 KARRACMNYERFTYKININSDKETKGMM 517


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 207 QSRVHCLEYTTFSYVSNVNQKVTITALM 290
           ++R  C+ Y  F+Y  N+N       +M
Sbjct: 490 KARRACMNYERFTYKININSDKETKGMM 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,154
Number of Sequences: 438
Number of extensions: 5708
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)