Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31011
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 29 1.1
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 29 1.1
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.9
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 27 2.5
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 27 2.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 3.3
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 4.4
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 5.8
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 26 5.8
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 26 5.8
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 7.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 7.7
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 26 7.7
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.7 bits (61), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 629 CWKPGIEKLWNCCRWYCG 576
C G +++W CC WY G
Sbjct: 2060 CIVQGFQQIWACCLWYWG 2077
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 159 VPATTPVPILKQINRQNDDGSYSYGYEAADGS-SRLKRSTLMGMSRGN 299
V T+P P LK N DG+YS Y +DGS R R+ + SR N
Sbjct: 205 VSDTSPNPALK-----NPDGTYSPAYLLSDGSLERAGRNNTVPFSRTN 247
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 369 SNPLALLAPYEISLCFPLSSIYPYFPATSPLGYFVSILMNRRL 241
S P+ + +P+ S C+P PYFP S +S+L + +
Sbjct: 109 SLPVDVASPFLPSECYPSKVELPYFPLLSKPNTLLSLLNDEEI 151
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 566 FKLNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQTPKFNFPTRGHFQPPNFNSPKFN 739
FKL +NT Q ++T+P T+A +P+ N+ + +Q PN SP F+
Sbjct: 456 FKLQKNTEKEIDEQVPSQSNNTTP---TSAKSDSASPQ-NWFSSFSYQTPNSASPPFS 509
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 610 SIPGFQHKPQLPNRSFSYQANPQVQFPNKGAFSTPKLQFP 729
S PG + KP++ RS ++ + AF+T K+ FP
Sbjct: 146 SPPGVKRKPKIVERSVNWTTELLLALKATDAFNTTKVFFP 185
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = +2
Query: 404 TLHDPSSNALTDGQEDDGQYREDPKIYEDPKYNGRRARNPLKGFRQFQQPAPAGFKLNRN 583
++ +++ + E+DG + P+++ED +Y+ A + F + +
Sbjct: 127 SIQSGTNSEVVSDDEEDGNFASIPELHEDNEYHSNLATSS----NPFSDGSSSKSASLTA 182
Query: 584 TNGSSSRAFQFQVSSTSPNY-----QTAASVTKQTPKFNFPTR 697
++ ++S F +STS N ++ AS T FN +R
Sbjct: 183 SSAAASPTVSFSPASTSENLTPTSSKSLASNTSLVQSFNSASR 225
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 746 VRRLFLAGKNQFFFNSGDL*KVSLQRPNFFSP 841
V +F + F +++ L + L+RPNFFSP
Sbjct: 12 VDAIFAISSSTFLWSTWVLQRTILKRPNFFSP 43
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 705 FNPQTSIPQSSITRFAGYFWQAK 773
+NP++ + +S +RF GY W K
Sbjct: 2396 WNPRSKVDSTSFSRFPGYKWFLK 2418
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 195 INRQNDDGSYSYGYEAADGSSRLKRSTLMGMSRGNMGISTRAGNKGRSRTEPAALEDSSP 374
+NR+N +G ++ SSRL + +L ++ N S GN + + S
Sbjct: 46 LNRRNS----VFGLPSSGLSSRLSKPSLSSINNSNNSSSNTGGNV-LPNPALTPVRNMSN 100
Query: 375 KEPVSWS 395
K P++WS
Sbjct: 101 KPPLTWS 107
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 537 DSSSNQPQPASNLTAIPTAAVPELFNSRFPAQAPIT 644
D S+ Q Q TAIPT+ N+ P QAP++
Sbjct: 178 DQSARQHQVLVGQTAIPTSEASSSINNT-PLQAPVS 212
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 602 RAFQFQVSSTSPNYQTAAS----VTKQTPKFNFPTRGHFQPPNFN 724
+ Q ++ S SP + AA V TPK N TRG + P+ N
Sbjct: 311 KQMQQKLDSMSPEWYQAADPSNGVVDGTPKLNSNTRGSSKRPSVN 355
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 303 GISTRAGNKGRSRTEPAALEDSSPKEPV 386
G +T + +KG++R+E L+DS+ K V
Sbjct: 459 GTATISSHKGKTRSETRDLDDSAEKRRV 486
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 7.7
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +2
Query: 395 PPPT-LHDPSSNALTDGQEDDGQYREDPKIYEDPKYNGRRARNPLKGFRQFQQPAPAGFK 571
PPPT LHD S ++ E +G+ P R AR+ + F Q +G+
Sbjct: 50 PPPTRLHDRSFKPVSKNYESEGRLTPPP-----VSMGYRYARSSKQSF----QREDSGYN 100
Query: 572 LNRNTNGSSSRAFQFQVSSTSP 637
+ TN SS R + S SP
Sbjct: 101 DDVVTNSSSHRTPRHHRRSYSP 122
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 553 WLLELSEAFERVSRSSAIVFRVFVDLRVLAVLTVVF 446
W + LS + + AIV RV +D + A L +VF
Sbjct: 109 WFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVF 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,997
Number of Sequences: 5004
Number of extensions: 78978
Number of successful extensions: 280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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