Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31011
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1393 + 29846884-29847465 32 0.50
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350... 31 0.87
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 31 1.5
02_05_0151 - 26299042-26299207,26301678-26301851,26301926-263019... 31 1.5
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 30 2.0
10_08_0260 - 16290798-16290893,16292284-16292570,16293248-162939... 30 2.7
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743... 29 3.5
03_01_0646 + 4742398-4742994,4743681-4744085 29 3.5
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 29 4.6
01_07_0346 + 42889121-42890406,42896115-42896118 29 4.6
01_03_0276 - 14489847-14489921,14490144-14490240,14491480-144915... 29 4.6
11_01_0746 + 6294277-6294687 29 6.1
07_01_0962 - 8075975-8077282 29 6.1
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399... 29 6.1
03_02_0178 + 6195402-6199158,6199438-6200003 29 6.1
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 28 8.1
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728 28 8.1
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 28 8.1
07_03_1166 - 24461881-24462013,24462255-24462643,24462877-244629... 28 8.1
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 28 8.1
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 28 8.1
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 28 8.1
>06_03_1393 + 29846884-29847465
Length = 193
Score = 32.3 bits (70), Expect = 0.50
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Frame = +2
Query: 392 VPPPTLHDPSSNALTDGQEDDGQYREDPKIYEDPK--YNGRRARNPLKGFRQFQQPAPAG 565
+P + DPS A D Q P P N RARN + ++F PAP G
Sbjct: 29 IPRASSGDPSPTAAD--APTDAQSATPPSSGAKPTGVKNRLRARNQARRVQEFTPPAPLG 86
Query: 566 FKLNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQT 673
+ ++ SS A SS S + A KQT
Sbjct: 87 ITMKSKSSSSSRPA--ASKSSASASASAATRREKQT 120
>05_01_0442 -
3500849-3500866,3500950-3501027,3501260-3501352,
3501419-3501536,3502815-3502945,3503027-3503299,
3504825-3504882,3505065-3505388,3507404-3507852,
3509514-3509554,3510263-3510412,3510519-3510906
Length = 706
Score = 31.5 bits (68), Expect = 0.87
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 707 QPPNF-NSPKFNYKVRRLFLAGKNQFFFNSGDL*KVSLQRPNFF 835
+P NF +SPKF KV L K+ FF SG V LQ P FF
Sbjct: 506 EPANFGSSPKFGQKVFTLARDKKSSFFARSG---TVLLQDPPFF 546
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 374 QGAGIMVPPPTLHDPSSNALTDGQEDDGQYR 466
+G + VPPP+LH+ + L DG+ D +R
Sbjct: 169 RGPRVTVPPPSLHEHLARMLRDGRGSDVAFR 199
>02_05_0151 -
26299042-26299207,26301678-26301851,26301926-26301987,
26302082-26302329,26303341-26303416,26303796-26303987,
26304109-26304225
Length = 344
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 275 PNGDVAGKYGYIDESGK-QREISYGASSARGF 367
P G ++G+ G E G Q +ISYG SSA GF
Sbjct: 83 PGGVLSGRLGVNGEKGSTQFQISYGVSSAFGF 114
>10_08_0198 + 15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 405 VGGGTMIPAPWGSNPLA 355
VG TM+P+PW SNP++
Sbjct: 991 VGSETMMPSPWSSNPMS 1007
>10_08_0260 -
16290798-16290893,16292284-16292570,16293248-16293901,
16294999-16295546,16295900-16295961,16296062-16296481
Length = 688
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 252 SSRLKRSTLMGMSRGNMGISTRAGNKGRSRTEPAALEDSSPKEPVSWS 395
++R+KR M + RG M + GN+ + R +P + + K +SW+
Sbjct: 7 TARMKRKEYMQLKRG-MKRARTDGNEEKGRADPTYISNMELKNTLSWN 53
>07_01_1156 -
10873223-10873417,10873498-10873579,10874235-10874336,
10874456-10874553,10874692-10874778,10874869-10875317,
10875414-10875744,10875766-10875884,10875935-10876124,
10876319-10876657,10876735-10876875,10876958-10877440,
10877703-10877901,10879447-10879643
Length = 1003
Score = 29.5 bits (63), Expect = 3.5
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = +2
Query: 173 SGPDIKANQQTKR*RIVQLR-L*SSRRFIKIETK--YPNGDVAGKYGYIDESGKQREISY 343
S DI + TK ++ +++ + S+ + ET+ Y ++ G +D + I+
Sbjct: 490 SDNDILSEFSTKLKKLARVKGMASTSEAYRAETRSNYKAEEIGRHSGNVDATDFAEVIAI 549
Query: 344 GASSAR-GFEPQGAGIMVPPPTLHDPSSNALTDGQEDDGQYREDPKIYEDPK 496
GA +A V PP H + + +EDDG+ ED + D K
Sbjct: 550 GAVAAHENVRDNNMDGKVHPPAAHKGAMDEGAQTEEDDGKQDEDDEDKGDEK 601
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 510 ERETRSKASDSSSNQPQPASNLTAIPTAAVPELFNSRFPA 629
ER T S A +S PA+ L+ P+ +VP RFPA
Sbjct: 217 ERATPSAAGACASRSLPPAAILSGAPSCSVPFSAGVRFPA 256
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -1
Query: 279 LGYFVSILMNRRLLHSRNCTIRHRFVC*FALISGPEWWRERLILGLVSAATPSRTLESSK 100
LGY++ L++ + + H F + W E LILG + A P+ +
Sbjct: 139 LGYWIHRLLHTPWAYHHIHRVHHEFTAPMGYAAPYAHWAEILILGFPAFAGPA-IVPCHM 197
Query: 99 QTWWL---VKNARKISLESTVKIGF 34
T+WL +++ I + S K+ F
Sbjct: 198 TTFWLWFVLRHLEAIHIHSGFKLPF 222
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 287 VAGKYGYIDESGKQREISYGASSARGFEPQGAGIMVP-PPTLHDPSSNA 430
VAG G G++R + YG S Q AG ++ PP +HDP S A
Sbjct: 55 VAGDAGE-RRDGERRLLVYGDGSTPQGALQAAGALLRHPPVVHDPESPA 102
>01_03_0276 -
14489847-14489921,14490144-14490240,14491480-14491546,
14491748-14491877,14491995-14492152,14493004-14493235,
14493760-14493895,14493982-14494085,14495709-14495987
Length = 425
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 522 RSKASDSSSNQPQPASNLTAIPTA 593
RSKAS S S P P A+PTA
Sbjct: 55 RSKASSSPSPPPSPGKEAVAVPTA 78
>11_01_0746 + 6294277-6294687
Length = 136
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 216 GSYSYGYEAADG-SSRLKRSTLMGMSRGNMGISTRAGNKGRSRTEPAALEDSSPKE 380
G S G EAA S R T G+ +G G S GR+ +PAAL SS E
Sbjct: 59 GGNSTGEEAARSRSGASSRPTGGGVGKGVDGGSEVVAVLGRTEADPAALSSSSAWE 114
>07_01_0962 - 8075975-8077282
Length = 435
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 323 KQREISYGASSARGFEPQGA----GIMVPPPTLHD-PSSNALTDGQEDDGQYREDP 475
++R ++ A++ARG P A PPP LH PS T +DDG R P
Sbjct: 27 RRRLLAANATTARGALPLPALRKPTKPPPPPPLHPRPSLPVPTTSSDDDGDIRRKP 82
>05_03_0413 +
13639476-13639537,13639702-13639783,13639865-13639940,
13640016-13640101,13640294-13640370,13641138-13641194,
13641294-13641378,13642331-13642417,13642603-13642683,
13643748-13643885,13643962-13644147,13644242-13644268
Length = 347
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 189 KQINRQNDDGSYSYGYEAADGSSRLKRSTLMGMSRGNMGISTRAGNKGR 335
K ++ Q DG ++ + ADG +RL S L + GN R NKGR
Sbjct: 28 KVLDDQVYDGEPTF-QKGADGQARLAGSILSSIESGNSVSHERTINKGR 75
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 452 DGQYREDPKIYEDPK-YNGRRARNPLKGFRQFQQPAPAGFKLNRN---TNGSSSRAFQFQ 619
D +YRE P P+ Y G RA + + F F++ P GF+ R+ +G S A++ Q
Sbjct: 60 DHRYRESPS----PRGYGGDRAMHRSESFSGFRREFPKGFRSERDRSRRDGGGSSAWRRQ 115
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 269 KYPNGDVAGKYGYIDESGKQREISYGASSARGFEPQGAGIMVPPPT 406
K G G+ GY +G+QR YG + QG G VPPPT
Sbjct: 403 KGAGGQGGGQPGYEGGTGQQR---YGVGAPPPTGQQGYGGGVPPPT 445
>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
Length = 502
Score = 28.3 bits (60), Expect = 8.1
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 17/164 (10%)
Frame = +2
Query: 344 GASSARGFEPQGAGIMVPPPTLHDPSSNALTDGQEDDGQY--------REDPKIYEDPKY 499
G + P+ + PP T PSS++ ++D +Y + P + P +
Sbjct: 210 GGDQRQSQMPEMSTARAPPRTGVSPSSSSHVQDRDDRSRYHHSRDQTPQRPPMLSRPPSF 269
Query: 500 NGRRARNPLKGFRQFQQPAPAGFKLNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQTPK 679
+GR + P G + P GF N ++ + Q + P
Sbjct: 270 HGRHSYPP--GDTPSENNPPQGFDRPYNWAHENAPGATPVRQESEHGSQDKQQMMPNAP- 326
Query: 680 FNFPTRGH----FQPPNFNSP-----KFNYKVRRLFLAGKNQFF 784
F FP H P N N P FNY +++ G QFF
Sbjct: 327 FMFPPMPHQPNFMMPMNMNQPLMSNTSFNYPLQQ---DGNPQFF 367
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 269 KYPNGDVAGKYGYIDESGKQREISYGASSARGFEPQGAGIMVPPPT 406
K G G+ GY +G+QR YG + QG G VPPPT
Sbjct: 403 KGAGGQGGGQPGYEGGTGQQR---YGVGAPPPTGQQGYGGGVPPPT 445
>07_03_1166 -
24461881-24462013,24462255-24462643,24462877-24462948,
24463718-24463887,24464232-24464362,24464744-24464860,
24464969-24465351,24465582-24465764
Length = 525
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 405 VGGGTMIPAPWGSNPLALLAP 343
VGG T+ P PW S+ +LAP
Sbjct: 387 VGGDTLQPCPWSSSIPVILAP 407
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 311 DESGKQREISYGASSARGFEPQGAG 385
D G+Q E SYG A F+ G G
Sbjct: 182 DRGGRQSEFSYGGRRANDFDDDGGG 206
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 234 YEAADGSSRLKRSTLMGMSRGNMGISTRAGNK 329
Y+A + ++R++ S + RG G ++RAGNK
Sbjct: 351 YQALEIANRVEASIYVWRRRGTSGAASRAGNK 382
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 269 KYPNGDVAGKYGYIDESGKQREISYGASSARGFEPQGAGIMVPPPT 406
K G G+ GY +G+QR YG + QG G VPPPT
Sbjct: 280 KGAGGQGGGQPGYEGGTGQQR---YGVGAPPPTGQQGYGGGVPPPT 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,506,096
Number of Sequences: 37544
Number of extensions: 566304
Number of successful extensions: 1911
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -