Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31011
(843 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) 31 0.89
SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74) 29 3.6
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12) 29 3.6
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27) 29 4.7
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08) 29 6.2
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 29 6.2
SB_28541| Best HMM Match : Hepar_II_III (HMM E-Value=3.7) 29 6.2
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 8.2
SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26) 28 8.2
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_11705| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.8e-17) 28 8.2
>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
Length = 221
Score = 31.5 bits (68), Expect = 0.89
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 572 LNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQTPKFNFPTRGHFQPPNFNSPKFNYKVR 751
L NT + +V S +P Q A + K+TP F TR + PP S + + +
Sbjct: 28 LKHNTEKFNQPRTPAKVPSINPLQQLQALIFKETPSFESRTRQNKPPPLLASNQVSVRAE 87
Query: 752 RLFLAGKN 775
R +A K+
Sbjct: 88 RSDVAMKD 95
>SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74)
Length = 330
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 141 QGQGSNVPATTPVPILKQINRQNDDGSYSYGYEAADGSSRLKRSTLMGMSRGNMGIS 311
QGQG+ A+ P P + +I+ + D S+ + S ++ +S G GIS
Sbjct: 128 QGQGAIETASMPFPRMSKIDSEASDSEQSHAKTRSQALSPDTSGSMTNISNGLRGIS 184
>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
Length = 567
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 395 PPPTLHDPSSNALTDGQEDDGQYREDPKIYEDPKYNGRRAR 517
P P H + + G D +Y +P+ +E P+Y G AR
Sbjct: 527 PDPRYHGHTPDPRYHGNPPDPRYHGNPRYHEHPRYYGVIAR 567
>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
Length = 799
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 174 PVPILKQINRQNDDGSYSYGYEAADGSSR 260
P L Q +RQN + YSY Y+ A SR
Sbjct: 412 PYSTLNQEHRQNRNDYYSYNYQRASSESR 440
>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 129 WLLIQGQGSNVPATTPVPILKQINRQNDDGSYSYGYE 239
WL + G GS V P++ I + D+G+YSY +
Sbjct: 675 WLYLSG-GSYVNIVDNAPLVNFIRQDTDNGTYSYNQD 710
>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 363 PLALLAPYEISLCFP-LSSIYPYFPATSPLGYFVSILMNRRLLHSRNCTIRHRFV 202
PL + Y S+ LS YPY PL YFV I CTI H+ V
Sbjct: 726 PLPPASDYRFSVNVTWLSPTYPY-KTYDPLKYFVKITKPEEFCFFGRCTIIHKTV 779
>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
Length = 407
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 563 GFKLNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQTPKFNFPTRGHFQPPNF 721
G K R S F+ + + AA TK+TPK P + +PP+F
Sbjct: 10 GRKRKRRIIDSDDEDKTFEAITIKQEPECAADSTKKTPKGKQPRKSPTRPPDF 62
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 563 GFKLNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQTPKFNFPTRGHFQPPNF 721
G K R S F+ + + AA TK+TPK P + +PP+F
Sbjct: 88 GRKRKRRIIDSDDEDKTFEAITIKQEPECAADSTKKTPKGKQPRKSPTRPPDF 140
>SB_28541| Best HMM Match : Hepar_II_III (HMM E-Value=3.7)
Length = 368
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 181 GTGVVAGTFDPWPCISSHAEQNTRVFK 101
G GVV G WPC+ H + RVF+
Sbjct: 319 GWGVVVGGSPAWPCVGRHT-RRLRVFR 344
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 525 SKASDSSSNQPQPASNLTAIPTAAVPELFNSRFPA 629
++A+D++S P P+ + A T +VP++ S A
Sbjct: 466 NQAADATSRHPSPSGSTNATSTPSVPDMVESALMA 500
>SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)
Length = 495
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 240 AADGSSRLKRSTLMGMSRGNMGISTRAGNKGRSRTEPAALEDSSPKEPVSWSHH 401
AAD + +KR+ M S ++GI G +R + A + +S K+P++ H
Sbjct: 187 AADENESIKRTESMSQSNSDLGI------PGVTRRQLAEIMESEEKQPIAIQQH 234
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 680 FNFPTRGH-FQPPNFNSPKFNYKVRRLFLAGKNQFFFNSGD 799
+N PT G + PP SP+F ++R+ + F N GD
Sbjct: 745 YNKPTIGIIYPPPEVRSPEFESRIRQNEINNPKFNFLNQGD 785
>SB_11705| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.8e-17)
Length = 413
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/68 (27%), Positives = 24/68 (35%)
Frame = -1
Query: 417 GSCSVGGGTMIPAPWGSNPLALLAPYEISLCFPLSSIYPYFPATSPLGYFVSILMNRRLL 238
G C G G I WG N L P ++ +S Y G+ + N L
Sbjct: 120 GVCGKGSGEKIMYAWGKNAPTLELPEGVAFKVGQASSVKYLVLQVHYGHVDKFVKNPDLK 179
Query: 237 HSRNCTIR 214
S TIR
Sbjct: 180 DSSGITIR 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,836,567
Number of Sequences: 59808
Number of extensions: 588280
Number of successful extensions: 1887
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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