Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31011
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical ...    29   3.1  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   5.5  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   5.5  
U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical p...    29   5.5  
U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical p...    29   5.5  
AF003135-7|AAK18991.1|  254|Caenorhabditis elegans Hypothetical ...    29   5.5  
AF003135-6|AAK18988.2|  288|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical
           protein F29C12.1b protein.
          Length = 590

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 644 QTAASVTKQTPKFNFPTRGHFQPPNFNSPKF 736
           Q  A   +Q P+FN P + H QP  F +P +
Sbjct: 110 QVQAQHQQQQPQFNIPLQPHAQPVQFAAPNY 140


>Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical
           protein F29C12.1a protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 644 QTAASVTKQTPKFNFPTRGHFQPPNFNSPKF 736
           Q  A   +Q P+FN P + H QP  F +P +
Sbjct: 112 QVQAQHQQQQPQFNIPLQPHAQPVQFAAPNY 142


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 289 RGEIWVYRRERETKGDLVRSQQR*RIRAPRSRYHGPTTDAARPV 420
           R +I + R E +TK + ++  +   +   RS YHGPT +  + +
Sbjct: 44  REQIEMRRVESDTKEEFLKVSEPLAVEEGRSSYHGPTLETVQGI 87


>AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical
           protein F33E11.3 protein.
          Length = 651

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +2

Query: 398 PPTLHDPSSNALTDGQEDDGQYREDPKIYEDPK 496
           P  + +PS+N   D ++++  +++ P++ E+PK
Sbjct: 443 PGKVEEPSNNPFFDEEDEEEDFKDAPELPEEPK 475


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 296 KYGYIDESGKQREISYGASSARGFEPQGAGIMVPPPTLHDPSSNALTDGQEDDGQYREDP 475
           +Y   + + +QR+++   +  +G +P+ A   V PP +   S     D Q D   Y +  
Sbjct: 166 EYDLKELNERQRQVARNKALKKGLDPEEAASSVHPPKITTASK---FDRQTDRRSYGDRR 222

Query: 476 KIYEDP 493
            ++E+P
Sbjct: 223 YLFENP 228


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 296 KYGYIDESGKQREISYGASSARGFEPQGAGIMVPPPTLHDPSSNALTDGQEDDGQYREDP 475
           +Y   + + +QR+++   +  +G +P+ A   V PP +   S     D Q D   Y +  
Sbjct: 270 EYDLKELNERQRQVARNKALKKGLDPEEAASSVHPPKITTASK---FDRQTDRRSYGDRR 326

Query: 476 KIYEDP 493
            ++E+P
Sbjct: 327 YLFENP 332


>U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical
           protein F01F1.1c protein.
          Length = 641

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
 Frame = +2

Query: 362 GFEPQ--GAGIMVPPPTLHDPSSNALTDGQEDDGQYREDPKIYEDPKYN--GRRARNPLK 529
           GF P   G+G +VPPP     + NA      +   +   P        N  GR       
Sbjct: 68  GFHPSTWGSGPIVPPPPPQQSAVNATAQAAYNQASFNYAPPPPPQNWNNGYGRGRGGGAN 127

Query: 530 GFRQFQQPAP-AGFKLNRNTNGSS 598
            + Q Q+P     F LNR  N S+
Sbjct: 128 NWNQQQRPQQFQPFALNRKNNSSA 151


>U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical
           protein F01F1.1a protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
 Frame = +2

Query: 362 GFEPQ--GAGIMVPPPTLHDPSSNALTDGQEDDGQYREDPKIYEDPKYN--GRRARNPLK 529
           GF P   G+G +VPPP     + NA      +   +   P        N  GR       
Sbjct: 73  GFHPSTWGSGPIVPPPPPQQSAVNATAQAAYNQASFNYAPPPPPQNWNNGYGRGRGGGAN 132

Query: 530 GFRQFQQPAP-AGFKLNRNTNGSS 598
            + Q Q+P     F LNR  N S+
Sbjct: 133 NWNQQQRPQQFQPFALNRKNNSSA 156


>AF003135-7|AAK18991.1|  254|Caenorhabditis elegans Hypothetical
           protein W03F11.5b protein.
          Length = 254

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 44  LTVDSREILRAFLTSHHVCFEDSSVLLGVAADTRPRIKRSRHHSGPDIKANQQTKR*RIV 223
           +T DSR   RAFL +  VC E S+     A DT  R++  +   G +     +  R  I+
Sbjct: 129 MTPDSR---RAFLRARQVCLEQSADSCDEALDTFHRVRYGKSLLGGEEDGESEQYR-SII 184

Query: 224 QLRL 235
           + RL
Sbjct: 185 ERRL 188


>AF003135-6|AAK18988.2|  288|Caenorhabditis elegans Hypothetical
           protein W03F11.5a protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 44  LTVDSREILRAFLTSHHVCFEDSSVLLGVAADTRPRIKRSRHHSGPDIKANQQTKR*RIV 223
           +T DSR   RAFL +  VC E S+     A DT  R++  +   G +     +  R  I+
Sbjct: 163 MTPDSR---RAFLRARQVCLEQSADSCDEALDTFHRVRYGKSLLGGEEDGESEQYR-SII 218

Query: 224 QLRL 235
           + RL
Sbjct: 219 ERRL 222


>Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical
           protein F44G4.4a protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 1/142 (0%)
 Frame = +2

Query: 257 KIETKYPNGDVAGKYGYIDESGKQREISY-GASSARGFEPQGAGIMVPPPTLHDPSSNAL 433
           K++T+ P  +V      + E  K+ E++  G+   +  +P+         T+ DP+ +  
Sbjct: 7   KVKTE-PAAEVKSPLDEVKEIRKEAELTQTGSDEKKTTDPEFI-------TVQDPNGDEP 58

Query: 434 TDGQEDDGQYREDPKIYEDPKYNGRRARNPLKGFRQFQQPAPAGFKLNRNTNGSSSRAFQ 613
            +    DG           P   G + +NP  G  +  Q  P+G KL    +G  ++ F 
Sbjct: 59  IELPTVDGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLKLIAPADGWENKTFF 118

Query: 614 FQVSSTSPNYQTAASVTKQTPK 679
             V+  S   +  +S    + K
Sbjct: 119 VIVAPQSERVRALSSADATSAK 140


>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = +3

Query: 243 ADGSSRLKRSTLMGMSRG-------NMGISTRAGNKGRSRTEPAALEDSSPKEPV 386
           A+ +  LKR+    +SRG       + GIS+ +     + +EPAA   S+PK P+
Sbjct: 166 AEKAKELKRAQKEALSRGLKPSYQSSTGISSSSTPNAAAVSEPAAPRPSAPKGPI 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,008,568
Number of Sequences: 27780
Number of extensions: 454866
Number of successful extensions: 1646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)