Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31011
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.50 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.50 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.87 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 515 RNPLKGFRQFQQPAPAGFKLNRNTNGSSSRAFQF 616
           R P    +Q +QP     +L R ++G++S  F F
Sbjct: 287 RTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPF 320


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 515 RNPLKGFRQFQQPAPAGFKLNRNTNGSSSRAFQF 616
           R P    +Q +QP     +L R ++G++S  F F
Sbjct: 287 RTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPF 320


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 281  GDVAGKYGY-IDESGKQREISY-GASSARGFEPQGAGIMVPPPTL-HDPSSNALTDGQED 451
            G   G+YG   D  G +  +      SAR     G+    PPP   HD ++++  D +E 
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPPPRNHDQNNSSFNDSKES 1880

Query: 452  D 454
            +
Sbjct: 1881 N 1881


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 378 PWGSNPLALLAPYEISLCFPLSSIYPYFPATSPL 277
           PW S+ L  L      LC P   IY +F  +  +
Sbjct: 525 PWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGTI 558


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 378 PWGSNPLALLAPYEISLCFPLSSIYPYFPATSPL 277
           PW S+ L  L      LC P   IY +F  +  +
Sbjct: 578 PWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGTI 611


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 617 QVSSTSPNYQTAASVTKQTPKFNFPTRGHFQ-PPNF 721
           Q++S  P   + +S     PK N  T    Q PPNF
Sbjct: 349 QMASPEPPKSSESSTGSSIPKLNLSTALMSQPPPNF 384


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 102 LKTLVFCSAWLLIQGQGSNVPATTPVPILKQINRQNDDGSYSYGYEAADGSS 257
           L  +V C+   L   Q  +  A     I  Q    N DG+Y   +E ++G S
Sbjct: 2   LVAVVLCTTATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGIS 53



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 141 QGQGSNVPATTPVP 182
           Q QGS++P   P+P
Sbjct: 97  QVQGSHIPTAPPIP 110


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 557 PAGFKLNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQTP 676
           P    L+RN   S  R+      S+  NY+T  S   + P
Sbjct: 23  PGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELP 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,875
Number of Sequences: 438
Number of extensions: 6596
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)