Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31011
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    33   0.31 
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom...    32   0.41 
At4g23840.1 68417.m03428 leucine-rich repeat family protein            31   0.72 
At4g00820.1 68417.m00113 calmodulin-binding protein-related cont...    30   1.7  
At2g06845.1 68415.m00766 expressed protein                             30   1.7  
At5g53030.2 68418.m06586 expressed protein                             30   2.2  
At5g53030.1 68418.m06587 expressed protein                             30   2.2  
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ...    30   2.2  
At5g44100.1 68418.m05396 casein kinase, putative similar to dual...    29   2.9  
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein...    29   5.1  
At1g11540.1 68414.m01325 expressed protein  contains Pfam profil...    29   5.1  
At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type pept...    28   6.8  
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept...    28   6.8  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    28   8.9  
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    28   8.9  

>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +2

Query: 518 NPLK-GFRQFQQPAPAGFKLNRNTNG----SSSRAFQFQVSSTSPNYQTAASVTKQTPKF 682
           +PL   F Q   P+  GF    + +     S++ +F F  SST P++   +S +  TP F
Sbjct: 33  SPLSFSFNQSSNPSSTGFGFGSSVSSTPASSTTPSFGFGASST-PSFGFGSSASSSTPSF 91

Query: 683 NFPTRGHFQPPNFNSPKFNY 742
            F +     P +  +P F +
Sbjct: 92  GFGSSASVTPAS-TTPSFGF 110


>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to Hrs [Rattus
           norvegicus] GI:8547026; contains Pfam profiles PF00790:
           VHS domain, PF03127: GAT domain
          Length = 506

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 141 QGQGSNVPATTPVPI-LKQINRQNDDGSYSYGYEAADGSSRLKRSTLMGMSRGN 299
           + +G++VPAT P PI L  IN  +DD      +     + R KR +  G  +GN
Sbjct: 266 KAKGNSVPATAPTPIPLVSINHDDDDDESDDDF--LQLAHRSKRESARGTGQGN 317


>At4g23840.1 68417.m03428 leucine-rich repeat family protein
          Length = 597

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 353 CWLRTRSPFVSRSRRYTHISPRHPH 279
           CWL T+       +RY HI  RH H
Sbjct: 490 CWLLTKDDIAGLCKRYPHIKVRHEH 514


>At4g00820.1 68417.m00113 calmodulin-binding protein-related
           contains Pfam profile PF00612: IQ calmodulin-binding
           motif
          Length = 534

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 572 LNRNTNGSSSRAFQFQVSSTSPNYQTAASVTKQTPKF 682
           L R +N S S+AF  QV  T  +Y T     ++ PK+
Sbjct: 261 LRRESNNSISQAFSHQVRRTRGSYSTGDEYEEERPKW 297


>At2g06845.1 68415.m00766 expressed protein
          Length = 315

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 205 CLLICFNIGTGVVAGTFDPWPCISSHAEQNTRVFKT 98
           C L C    TG+ +G   PW C S    +N +VF T
Sbjct: 126 CKLACLP-PTGIASGPLAPWICWSLWKSRNQKVFST 160


>At5g53030.2 68418.m06586 expressed protein
          Length = 224

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 469 GPEDLRRPEIQWQKSAKPAQRLQTVPATSPSR 564
           GP DLRR  +   +SA   ++L+ VPA +P +
Sbjct: 103 GPYDLRRRSLSLPRSAAVIRKLRGVPAPAPEK 134


>At5g53030.1 68418.m06587 expressed protein
          Length = 245

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 469 GPEDLRRPEIQWQKSAKPAQRLQTVPATSPSR 564
           GP DLRR  +   +SA   ++L+ VPA +P +
Sbjct: 103 GPYDLRRRSLSLPRSAAVIRKLRGVPAPAPEK 134


>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 287

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +2

Query: 257 KIETKYPNGDVAGKYGYIDESGKQREISYGASSARGFEPQGAGIMVPPPTLHDPSSNALT 436
           ++  + PN DV  K    D  G + + S    S    + +   +     +  D SS    
Sbjct: 117 QVNFQLPNEDVKAKQDD-DADGSEEDSSDDDDSENSGDEEEEKVTAESDSEEDDSS---- 171

Query: 437 DGQEDDGQYREDPKIYEDPK 496
           D +EDD    E PK  E+PK
Sbjct: 172 DDEEDDSSEEETPKKPEEPK 191


>At5g44100.1 68418.m05396 casein kinase, putative similar to dual
           specificity kinase 1 gi|1216484|gb|AAB47968
          Length = 476

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 162 PATTPVPILKQINRQNDDGSYS---YG-YEAADGSSRLKRSTLMGMSRGNMGISTRAGNK 329
           P TT  P  +  +R +DDG +S   +G  E A+ SSR + S+       +    + AG  
Sbjct: 351 PTTTSSPRDRSRSRNSDDGPFSKQTHGDSERANSSSRYRASSSRKAVAASSSRPSSAGGP 410

Query: 330 GRSRTEPAALEDS 368
             SRT    +  S
Sbjct: 411 SESRTSSRLVSSS 423


>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 411

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
 Frame = +2

Query: 266 TKYPNGDVAGKYGYIDESGKQREISYGASSARGF---EPQGAGIMVPPPTLHDPSSNALT 436
           T+ P+G     YGY   SG   +  YG  +A G     P G G        ++P S    
Sbjct: 331 TQSPSGYSNQGYGYGGYSGS--DSGYGNQAAYGVVGGRPSGGGS-------NNPGSGGYM 381

Query: 437 DGQEDDGQYREDPKIYEDPKYNGRRAR 517
            G   DG +R DP       YN  + R
Sbjct: 382 GGGYGDGSWRSDPSQGYGGGYNDGQGR 408


>At1g11540.1 68414.m01325 expressed protein  contains Pfam profile:
           PF01925 domain of unknown function DUF81
          Length = 367

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -3

Query: 619 LELKSSGTAAVGIAVKFEAGWGWLLELSEAFERVSRSSAIVFRVFVDLRVLAVL 458
           L ++ +GTAA+   V F A    L+ + +   +  R+S IVF V + + +  VL
Sbjct: 289 LGMEHAGTAAIFALVCFVASLVGLMVVKKVIAKYGRASIIVFAVGIVMALSTVL 342


>At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative contains
           Pfam profile: PF00254, FKBP-type peptidyl-prolyl
           cis-trans isomerases
          Length = 186

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 305 YIDESGKQREISYGASSARGFEPQGAGIMVPPPTLHDPSSNAL 433
           Y   +GK+ E+      + G   +G GI +PP +L +  S  L
Sbjct: 71  YRSGTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGL 113


>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative contains
           Pfam profile: PF00254, FKBP-type peptidyl-prolyl
           cis-trans isomerases
          Length = 694

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 305 YIDESGKQREISYGASSARGFEPQGAGIMVPPPTLHDPSSNAL 433
           Y   +GK+ E+      + G   +G GI +PP +L +  S  L
Sbjct: 71  YRSGTGKKAEVRKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGL 113


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 402 GGGTMIPAPWGSNPLALLAPYEISLCFPLSSIYPYFPATSPL 277
           GG T  P  +G   L++L  YE S C P+   + +FP+  P+
Sbjct: 212 GGATYTPL-FGKAWLSVLGVYEWSGCKPIPPEFWFFPSYFPI 252


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 683 NFPTRGHFQPPNFNSPKFNYKVRRLFLAG-KNQFFFNSGDL*KVSLQRPN 829
           N P  GH QPP   +P +   +    +AG +N   F SG + +  +  PN
Sbjct: 297 NMPFYGHSQPPPGFNPMYGAMMGNPMVAGLQNYRMFGSGMMNQGPMMPPN 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,428
Number of Sequences: 28952
Number of extensions: 438789
Number of successful extensions: 1426
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)