Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31010
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   9.0  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 80  AEHEDPAHYDFEYSVHDQQSGDIKQQK 160
           +EH DPA  D  +     QS D+++Q+
Sbjct: 31  SEHTDPAVADEGFPAEQYQSADLEKQQ 57


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = -2

Query: 312 DLGGLSDGVSLVADVSV-----KSVTLSEVYSTMRWTPS 211
           + GGL + + ++ D+S+     ++V+L  +Y+T  W P+
Sbjct: 156 ETGGLQERIPIIEDISINEDTQRTVSLETIYAT--WIPT 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,726
Number of Sequences: 5004
Number of extensions: 21926
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)