Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31010
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0138 + 13325418-13325954                                         29   4.0  
04_01_0463 - 5985963-5986001,5986147-5986458                           29   4.0  
11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611           28   5.3  
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549...    28   5.3  

>10_07_0138 + 13325418-13325954
          Length = 178

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 487 WRLGQRMRPW*RGQHRRSWRQERCRR 410
           WR  +R R     + RRSWR+ RC R
Sbjct: 91  WRRSRRWRSRCSRRWRRSWRRRRCSR 116


>04_01_0463 - 5985963-5986001,5986147-5986458
          Length = 116

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 303 GLSDGVSLVADVSVKSVTLSEVYSTMRWTPSGCTSE*KPW 184
           G+SDG S    + + S T+ +    MRW P   T   + W
Sbjct: 62  GISDGGSTRESLWIDSATVDKGEDVMRWRPGVATCRQRRW 101


>11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611
          Length = 309

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 468 CDLGDGASIGDLGDRSGVGDLCN 400
           C  G G SIG LG R+G G++ N
Sbjct: 151 CGPGHGISIGSLGGRAGEGEVRN 173


>02_05_0157 -
           26353971-26354336,26354645-26354726,26354838-26354933,
           26355365-26356068
          Length = 415

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 486 GDWGSVCDLGDGASIGDLGDRSGVGDLCNG 397
           GD G V   G G + GD G  +G G  C+G
Sbjct: 91  GDGGGVAGAGGGVAGGDGGGVAGAGGGCDG 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,877
Number of Sequences: 37544
Number of extensions: 176376
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)