Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31010
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)           31   1.0  
SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8)            27   9.4  

>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 535 GEEKVT*AKEPHHRLLWRLGQRMRPW*RGQHRRSWRQER 419
           GE++V   KE   R  WR  ++ R   + + RR WRQ R
Sbjct: 170 GEKEVETEKEVEERRKWRQRRKWRQRRKWRQRRKWRQRR 208



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 535 GEEKVT*AKEPHHRLLWRLGQRMRPW*RGQHRRSWRQER 419
           GE++V   KE   R  WR  ++ R   + + RR WRQ +
Sbjct: 88  GEKEVETEKEVEKRRKWRHRRKWRQRRKWRQRRKWRQRK 126



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 544 EIAGEEKVT*AKEPHHRLLWRLGQRMRPW*RGQHRRSWRQE 422
           E+  E++V   ++  HR  WR  ++ R   + + R+ WR+E
Sbjct: 91  EVETEKEVEKRRKWRHRRKWRQRRKWRQRRKWRQRKKWRRE 131


>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 378  QDRLQRSHCKGRLHRSCRQDRLCWPRHQGRIRCPSRQSSL*CGSLAH 518
            QD L  + CK R    C  D LC  R+  R  C +R +    G   H
Sbjct: 1295 QDTLHDTLCKTRYTTLCMYDTLCKTRYMTRYACTTRYARQATGHAMH 1341


>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
          Length = 1154

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 489 FGDWGSVCDLGDGASIGD---LGDRSGVGDLC 403
           +GD G  C LGDG   GD   LGD  G GD C
Sbjct: 78  YGD-GDYCGLGDGYGDGDYCGLGDDYGDGDYC 108



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 486 GDWGSVCDLGDGASIGD---LGDRSGVGDLC 403
           GD G  C LGDG   GD   LGD  G GD C
Sbjct: 55  GD-GDYCGLGDGYGDGDYCGLGDGYGDGDYC 84



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 489 FGDWGSVCDLGDGASIGDLGDRSGVGD 409
           +GD G  C LGDG   GD GD  G+GD
Sbjct: 102 YGD-GDYCGLGDGYGDGD-GDYCGLGD 126


>SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 80  AEHEDPAHYDFEYSVHDQQSGDIKQQKESRAGDAVQGF 193
           +EH+D  H D + S HD    D  +  +S+  D+   +
Sbjct: 35  SEHDDSEHDDHDDSEHDDSKHDNSKHDDSKHDDSEHNY 72



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  AEHEDPAHYDFEYSVHDQQSGDIKQQKESRAGDA 181
           +EH+D  H D E+  HD    D  +   S+  D+
Sbjct: 30  SEHDDSEHDDSEHDDHDDSEHDDSKHDNSKHDDS 63


>SB_41923| Best HMM Match : Lentiviral_Tat (HMM E-Value=3.8)
          Length = 450

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 101 HYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGV 220
           H + EY  + + +  IK   E  +   +Q FY L QP GV
Sbjct: 183 HKNPEYDDYRRITTTIKDSSEKESDHGLQEFYFLNQPHGV 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,677
Number of Sequences: 59808
Number of extensions: 187768
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)