Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31009
         (842 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    24   1.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   7.0  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   7.0  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 107 MRAFVV--LACVAMAYGRPEPPVGYSY 181
           MR FV+  +ACV++A  RPE      Y
Sbjct: 1   MRFFVIFFVACVSVALARPEDQYTIKY 27


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 454 VHVPPPEPVEQRLPRIPAGLHPRN 525
           V +PPP     + PR P G +P +
Sbjct: 733 VKLPPPPHPHHQPPRNPVGTNPHD 756


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 454 VHVPPPEPVEQRLPRIPAGLHPRN 525
           V +PPP     + PR P G +P +
Sbjct: 625 VKLPPPPHPHHQPPRNPVGTNPHD 648


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -1

Query: 839 QVPFRPEFLPPKSN--RPKALPPISTHQDSL 753
           + P RP  LPPK     PK   PI   + S+
Sbjct: 63  KAPIRPVALPPKREIPSPKRSSPILAEKVSV 93


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 35  LIGY*INYHRVS 70
           L+GY INY R+S
Sbjct: 112 LLGYSINYRRIS 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,269
Number of Sequences: 336
Number of extensions: 3030
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)