Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31009
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398     31   1.1  
08_02_0229 - 14540302-14540736                                         30   2.7  
03_06_0316 + 33091194-33091370,33091451-33092155                       29   3.5  
01_06_1224 - 35508842-35510404                                         29   3.5  
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012     29   4.6  
12_01_0599 - 4892146-4893552                                           29   4.6  
04_04_0580 + 26361036-26361095,26361190-26361330,26361703-26361885     29   4.6  
04_04_0063 - 22441549-22442961                                         28   8.1  

>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
          Length = 187

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = -3

Query: 420 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 277
           V+T  SA   S +S A  AAAA G  T  + +    SA+ GNAAS  A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154


>08_02_0229 - 14540302-14540736
          Length = 144

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 364 CRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAADRGR 215
           CRR+G      R  Q++ RR+G  C   G  G      +N++V AAD GR
Sbjct: 71  CRRRGGTSGGLRGKQRAGRRRGGGCDAGGGDGTAG-RRANAAVGAADDGR 119


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 420 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 277
           ++T ++ATE  + +E   AAA +  +T       + + AK  AA RKA
Sbjct: 1   MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48


>01_06_1224 - 35508842-35510404
          Length = 520

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 430 PLVQKHIYVHVPPPEPVEQRLP-RIPAGLHP 519
           P  + H+  + PPP PV   LP  +  GLHP
Sbjct: 50  PASETHLPPYAPPPAPVVSELPDDLEFGLHP 80


>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
          Length = 296

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -3

Query: 435 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 277
           KRST+ S+  S+ +      A  AAA    STT T +    S+A   AA+  A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199


>12_01_0599 - 4892146-4893552
          Length = 468

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 647 QAFLTSNIITSVFSRFCGWIG 585
           QA L S + TSVF   CGW+G
Sbjct: 273 QASLLSIVATSVFYALCGWMG 293


>04_04_0580 + 26361036-26361095,26361190-26361330,26361703-26361885
          Length = 127

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 654 ASLILLIPNSKQPNSALKNREV*LSIKIIKNPKKGILVGANWREGLWPVGLRRKEFRPEG 833
           +S +LL+PNS+ P +AL  R   +       P++G +VG   R      G  R  F P G
Sbjct: 6   SSAVLLLPNSRAP-AALSRRRAPV-------PRRGFVVGFEGRSRRGAAGTVRACFNPPG 57

Query: 834 N 836
           +
Sbjct: 58  D 58


>04_04_0063 - 22441549-22442961
          Length = 470

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 417 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTT 253
           +T  +AT  S  + A+TA+ A         S+R VS+AKG   AAS + T   +  T
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRT 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,855,361
Number of Sequences: 37544
Number of extensions: 363568
Number of successful extensions: 1400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)