Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31009
(842 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89) 28 8.2
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 8.2
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+FPSGR RR P+G+ PSRQL +P
Sbjct: 389 RFPSGRLPSRRLPSGRLPSRQLPSGPLP 416
Score = 32.3 bits (70), Expect = 0.51
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PSR+L R+P
Sbjct: 264 RLPSGRLPSRRLPSGRLPSRRLPSGRLP 291
Score = 32.3 bits (70), Expect = 0.51
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PSR+L R+P
Sbjct: 274 RLPSGRLPSRRLPSGRLPSRRLPSGRLP 301
Score = 32.3 bits (70), Expect = 0.51
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PSR+L R+P
Sbjct: 379 RLPSGRLPSRRFPSGRLPSRRLPSGRLP 406
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G PSR+L R+P
Sbjct: 194 RLPSGRLPSRRLPSGWLPSRRLPSRRLP 221
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+GQ PS +L R+P
Sbjct: 324 RLPSGRLPSRRLPSGQLPSGRLPSGRLP 351
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G PSR+L R+P
Sbjct: 137 RLPSGRLPSRRLPSGCLPSRRLPSGRLP 164
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PSR+ R+P
Sbjct: 369 RLPSGRLPSRRLPSGRLPSRRFPSGRLP 396
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PS +L R+P
Sbjct: 17 RLPSGRLPSRRLPSGRLPSGRLPSRRLP 44
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PS +L R+P
Sbjct: 47 RLPSGRLPSRRLPSGRLPSGRLPSRRLP 74
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+ + PSR+L R+P
Sbjct: 62 RLPSGRLPSRRLPSRRLPSRRLPSRRLP 89
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSG RR P+G+ PSR+L R+P
Sbjct: 147 RLPSGCLPSRRLPSGRLPSRRLPSRRLP 174
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PS +L R+P
Sbjct: 284 RLPSGRLPSRRLPSGRLPSGRLPSGRLP 311
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR R P+G+ PSR+L R+P
Sbjct: 294 RLPSGRLPSGRLPSGRLPSRRLPSGRLP 321
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR RR P+G+ PS +L R+P
Sbjct: 304 RLPSGRLPSRRLPSGRLPSGRLPSGRLP 331
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PS R RR P+G+ PSR+L R+P
Sbjct: 7 RLPSRRLPSRRLPSGRLPSRRLPSGRLP 34
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PS R RR P+G+ PSR+L R+P
Sbjct: 37 RLPSRRLPSRRLPSGRLPSRRLPSGRLP 64
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PS R RR P+G+ PSR+L R+P
Sbjct: 87 RLPSRRLPSRRLPSGRLPSRRLPSGRLP 114
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSG+ RR P+G PSR+L R+P
Sbjct: 117 RLPSGQLPSRRLPSGCLPSRRLPSGRLP 144
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 838 KFPSGRNSFRRSPTGQRPSRQLAPTRIP 755
+ PSGR R P+G PSR+L R+P
Sbjct: 344 RLPSGRLPSGRLPSGWLPSRRLPSRRLP 371
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 832 PSGRNSFRRSPTGQRPSRQLAPTRIP 755
PS R RR P+G+ PSR+L R+P
Sbjct: 211 PSRRLPSRRLPSGRLPSRRLPSGRLP 236
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 832 PSGRNSFRRSPTGQRPSRQLAPTRIP 755
PS R RR P+G+ PSR+L R+P
Sbjct: 361 PSRRLPSRRLPSGRLPSRRLPSGRLP 386
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 374 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSL 505
A +V + D++V L LL NTSMF+ QN +SK ++ L
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVIKL 306
>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +2
Query: 2 SHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPEP 163
SH + + + +IGY +YHRV S I L +SS H++ F+ L G P P
Sbjct: 638 SHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPLP 697
Query: 164 PVGYSYSAPR 193
+GY S R
Sbjct: 698 IIGYPTSYHR 707
>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 748 QKRESWWVLIGGRAFGRLDFGGRNSG 825
Q R+ WW +I RAF L FG + G
Sbjct: 420 QPRKYWWPIINSRAFETLLFGKKGEG 445
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -3
Query: 456 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 286
N D+F +++ + + R S T+S+I + +A TT++++I + A++G
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552
Query: 285 RKAT*GSRMTTIATVL 238
+K T SR +++ + L
Sbjct: 553 KKNT--SRPSSVTSSL 566
>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 555 NSSHSYCPHNSYPTTKTREDTRNNVAG*ESLKEASLILLIPNSKQPNS 698
NS H+ HNS P T TR ++ N SL + +PN+ + NS
Sbjct: 30 NSLHNTTRHNSLPNT-TRHNSLPNTTRHNSLPNTTRYNSLPNTTRHNS 76
>SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89)
Length = 251
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 555 NSSHSYCPHNSYPTTKTREDTRNNVAG*ESLKEASLILLIPNSKQPNS 698
NS H+ HNS P T TR ++ N SL + +PN+ + NS
Sbjct: 179 NSLHNTTRHNSLPNT-TRHNSLPNTTRHNSLTNTTRHNSLPNTTRHNS 225
>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 555 NSSHSYCPHNSYPTTKTREDTRNNVAG*ESLKEASLILLIPNSKQPNS 698
NS H+ HNS T TR ++ NN SL + +PN+ + NS
Sbjct: 111 NSLHNTTRHNSLTNT-TRHNSLNNTTRHNSLPNTTRHNSLPNTTRHNS 157
>SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 990
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 195 VTQEASALPLSAADTELLLLWSFWIPR 275
+T +A+ P + D + LW FW P+
Sbjct: 903 ITSQATLSPYTPEDVDEQFLWEFWAPK 929
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,889,384
Number of Sequences: 59808
Number of extensions: 389775
Number of successful extensions: 1547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -