Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31009
         (842 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3 prot...    33   0.98 
U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.                  33   0.98 
U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.     33   0.98 
BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome associ...    33   0.98 
AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3 pr...    33   0.98 
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              32   2.3  
Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.                   32   3.0  
AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome associ...    32   3.0  
AM491131-1|CAM32888.1|  417|Homo sapiens Rhesus blood group D an...    31   5.2  
BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processi...    31   6.9  
BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.      31   6.9  
AK123353-1|BAC85591.1|  195|Homo sapiens DC3) mRNA.  protein.          31   6.9  

>Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3
           protein.
          Length = 711

 Score = 33.5 bits (73), Expect = 0.98
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAAD 224
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 625 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 668


>U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.
          Length = 743

 Score = 33.5 bits (73), Expect = 0.98
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAAD 224
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 657 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 700


>U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.
          Length = 99

 Score = 33.5 bits (73), Expect = 0.98
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAAD 224
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 13  SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 56


>BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome
           associated protein protein.
          Length = 717

 Score = 33.5 bits (73), Expect = 0.98
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAAD 224
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674


>AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3
           protein.
          Length = 717

 Score = 33.5 bits (73), Expect = 0.98
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAAD 224
           +R R +GR H+RDR H++SV R+     ++   G++  H S+   S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 417 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTIAT 244
           ST  S T S+ ++   +  +A   STT T    + SAA  +  S   T  S +TT +T
Sbjct: 413 STTSSPTTSTTSATTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSGTTPSPVTTTST 470


>Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.
          Length = 586

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAAD 224
           +R R +GR H+RDR H++SV R+     ++   G++  H S+    + D
Sbjct: 500 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGGSRD 543


>AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome
           associated protein variant protein.
          Length = 717

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHNSNSSVSAAD 224
           +R R +GR H+RDR H++SV R+     ++   G++  H S+    + D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGGSRD 674


>AM491131-1|CAM32888.1|  417|Homo sapiens Rhesus blood group D
           antigen protein.
          Length = 417

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 153 ALNLQWDTATPLPEVTQE---ASALPLSAADTELLLLWSFW 266
           AL++ W    PLPE T++    + +P  +A    L LW FW
Sbjct: 180 ALSVAWCLPKPLPEGTEDKDQTATIPSLSAMLGALFLWMFW 220


>BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processing
           factor 40 homolog B (S. cerevisiae) protein.
          Length = 871

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 833 PFRPEFLPPKSNRPKALPPI 774
           PF P  LPP S RP A+PP+
Sbjct: 15  PFPPMGLPPMSQRPPAIPPM 34


>BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.
          Length = 788

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 833 PFRPEFLPPKSNRPKALPPI 774
           PF P  LPP S RP A+PP+
Sbjct: 15  PFPPMGLPPMSQRPPAIPPM 34


>AK123353-1|BAC85591.1|  195|Homo sapiens DC3) mRNA.  protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 833 PFRPEFLPPKSNRPKALPPI 774
           PF P  LPP S RP A+PP+
Sbjct: 10  PFPPMGLPPMSQRPPAIPPM 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,153,221
Number of Sequences: 237096
Number of extensions: 2071481
Number of successful extensions: 10068
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10068
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)