Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31009
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 30 1.8
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 29 3.1
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 29 3.1
U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical pr... 29 3.1
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 28 9.5
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 28 9.5
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 429 STRVSTRISATESSITSEAQTAAAAKGESTTETES 325
ST +T S TES+ TS T + ESTTE+ S
Sbjct: 189 STTTTTATSTTESTSTSTDSTTTESTTESTTESTS 223
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -3
Query: 429 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTI 250
+T ST S TES+ TS T + ESTTE+ S S + ++ + + TT
Sbjct: 209 TTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTSTSTDSTTTESTTE 268
Query: 249 AT 244
+T
Sbjct: 269 ST 270
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 429 STRVSTRISATESSITSEAQTAAAAKGESTTETES 325
ST ST + TES+ TS T + ESTTE+ S
Sbjct: 241 STSTSTDSTTTESTSTSTDSTTTESTTESTTESTS 275
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 429 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 253
+T ++ +E++ + A TAA ES T TES V+ +G+A + AT +TT
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTT 239
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 429 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 253
+T ++ +E++ + A TAA ES T TES V+ +G+A + AT +TT
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTT 239
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 429 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 253
+T ++ +E++ + A TAA ES T TES V+ +G+A + AT +TT
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTT 239
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 429 STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTT 253
+T ++ +E++ + A TAA ES T TES V+ +G+A + AT +TT
Sbjct: 182 ATTAASTTKDSETTTEASATTAATTTQESITTTES-DSVTTTEGSATTGAATTKDSVTT 239
>U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical
protein F35C8.5 protein.
Length = 300
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 120 WYSPVWLWPMAALNLQW--DTATPL--PEVTQEASALPLSAADTELLLLWSFWIPRWPFW 287
W +W++PMA + L W DT P+ P V + S L + + W +I W
Sbjct: 98 WNQLLWIYPMALVQLIWVPDTELPILAPTVFEMLSQLAIFFLAFDFTYFWFHYINHKVKW 157
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -3
Query: 417 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 274
+T SAT S++TS+ +++A G ST T++ + S+ + S +T
Sbjct: 457 ATGSSATGSTVTSDVASSSATGGSSTNATDTTQ--SSTDASTVSTSST 502
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -3
Query: 417 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 274
+T SAT S++TS+ +++A G ST T++ + S+ + S +T
Sbjct: 460 ATGSSATGSTVTSDVASSSATGGSSTNATDTTQ--SSTDASTVSTSST 505
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,116
Number of Sequences: 27780
Number of extensions: 291321
Number of successful extensions: 1085
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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