Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31009
         (842 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23230.1 68414.m02906 expressed protein                             34   0.10 
At5g28120.1 68418.m03396 hypothetical protein                          30   1.7  
At3g30816.1 68416.m03949 hypothetical protein                          30   2.2  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    30   2.2  
At4g05300.1 68417.m00803 hypothetical protein                          29   5.1  
At1g51830.1 68414.m05843 leucine-rich repeat protein kinase, put...    29   5.1  
At5g23850.1 68418.m02800 expressed protein                             28   6.8  
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro...    28   8.9  
At5g28110.1 68418.m03395 hypothetical protein                          28   8.9  
At4g21900.1 68417.m03166 MATE efflux family protein similar to r...    28   8.9  
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops...    28   8.9  
At3g22380.1 68416.m02825 expressed protein                             28   8.9  

>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -3

Query: 462 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 310
           Y+N D FL      + + +SA E+S++   Q AAA  G S T ++S+  VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 435 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 283
           ++S R STRISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At3g30816.1 68416.m03949 hypothetical protein
          Length = 342

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 435 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 280
           K+S R STRISA+E +  S        KGEST    T  I      +GN  +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 938

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 432  RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 280
            +S R STRISA+E +  S        KGEST     E+ RR    KG++   +
Sbjct: 843  KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895


>At4g05300.1 68417.m00803 hypothetical protein
          Length = 387

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 435 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 280
           ++S R STRISA+E +  S        KGEST     E+ +R    KG++   +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354


>At1g51830.1 68414.m05843 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from [Arabidopsis thaliana]
          Length = 675

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 135 WLWPMAALNLQWDTATPLPEVTQEASALPLSAADTELLLLWSFWIPRWPFWRQ-HF 299
           W      LN+   T   LP+     +A PL+A  T L + W+   P  PF+   HF
Sbjct: 29  WTQVTTNLNVNISTIYELPQSVMSTAATPLNANAT-LNITWTIEPPTTPFYSYIHF 83


>At5g23850.1 68418.m02800 expressed protein
          Length = 542

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 555 NSSHSYCPHNSYPTTKTREDTRNN 626
           N + + CP N YPTT + ED   N
Sbjct: 109 NETTASCPSNKYPTTTSFEDDDTN 132


>At5g48360.1 68418.m05975 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 782

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 833 PFRPEFLPPKSNRPKALPPISTHQDSLFWVFDNFDGKLN 717
           P  P F P +S+ P   PP+     + F VF  F   ++
Sbjct: 47  PISPPFFPLESSPPSPPPPLPPTPPTTFAVFPTFPANIS 85


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 435 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 283
           ++S R S RISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At4g21900.1 68417.m03166 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           MatE
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -3

Query: 420 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 274
           VS+ IS  ESS+T+ A+  AAAKG+     + ++ + A  G +  R  T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623


>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
           thaliana, EMBL:AC007020
          Length = 745

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -3

Query: 483 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 310
           LN ++G    ID+    RST + T+ S   S   SEA      + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 370 NRCRRQGRVHHRDRVHQKSVRRQG-KCCLQKGHLGIQNDHNSNSSVS 233
           +R R + R   RDR++ +S RR+G +  +  G+L    D +S  SV+
Sbjct: 65  DRERERERDRERDRLNSRSKRRRGERLMMVHGNLDDGGDDSSEESVN 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,640
Number of Sequences: 28952
Number of extensions: 283167
Number of successful extensions: 973
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)