Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31007
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.64 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   1.5  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   3.4  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 99  NTKMMFSRIEENVYTVTVHILQLKIFCT*VGMTILGQYIFSS 224
           NTK++ +R++ N+      +L+  + C   G  I   YIF S
Sbjct: 568 NTKVILNRLKSNIEHAKTSLLEAAVNCPLQGYLIQLTYIFQS 609


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 224 LVQFLYLQLFFCQIFWLFYFYVNLNFL*MS 313
           L +F  L +FF  +F+LF+FY++ N L +S
Sbjct: 284 LARFFCL-IFFPFLFFLFWFYMHFNILTIS 312


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 212 YFFKLVQFLYLQLFFCQIFWLFYFYVNLN 298
           +F+  + +LYL+L   + F +F  YVN++
Sbjct: 431 WFWIRIYYLYLKLMIFRPFLIFLAYVNIS 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,413
Number of Sequences: 5004
Number of extensions: 32315
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)