Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31007
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0024 - 10714741-10716241,10716774-10717840                       28   4.5  
01_01_1101 + 8731427-8732938                                           27   5.9  
01_01_0430 + 3258438-3259200,3259929-3261454                           27   7.8  

>06_02_0024 - 10714741-10716241,10716774-10717840
          Length = 855

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 123 IEENVYTVTVHILQLKIFCT*VGM-TILGQYIFSSSYNFCTSNYFFAKFF 269
           +  N+Y   +H   L + C   GM  ++G Y   SS +  TS Y F   F
Sbjct: 588 VNPNLYRPAIHSYALSV-CMVAGMFGLMGAYAAGSSQHMRTSIYIFVLLF 636


>01_01_1101 + 8731427-8732938
          Length = 503

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 90  LNLNTKMMFSRIE-ENVYTVTVHILQLKIFCT*VGMTILGQYIFSS 224
           L L    +F R+E ENV    +  L +   C+ VG+T LG++ F +
Sbjct: 289 LGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKT 334


>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 60  KL*SIDSTLELNLNTKMMFSRIEENVYTVTVH 155
           KL S+D    LNL+  M+  RI E+ + +T+H
Sbjct: 670 KLASLDFLSTLNLSNNMLEGRIPESPHFLTLH 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,303,351
Number of Sequences: 37544
Number of extensions: 146212
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)