Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31007
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)             30   1.1  
SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   2.6  
SB_14414| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
          Length = 443

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/56 (23%), Positives = 32/56 (57%)
 Frame = -3

Query: 226 ELEKIY*PNIVIPTYVQNILSCKM*TVTV*TFSSILENIILVFRFNSNVLSIDYNF 59
           E+ ++Y   +++ T+  N+++C + +    T  S   + +   + +SN+LS +Y+F
Sbjct: 228 EIRRLYHQIVLLYTFYNNLVACPLPSCVDPTNRSTRRHSLSFQQLHSNILSFNYSF 283


>SB_11456| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 391

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 132 NVYTVTVHILQLKI--FCT*VGMTILGQYIFSSSYNFCTSNYFFAKFFGCFTSMST*T 299
           N+Y VT+ I  + +  FC  + + +L + +++  +  C    F + FF  FTS+ T T
Sbjct: 53  NMYVVTLAISDILMGSFCMPLSLEVLIKAVWTKPFAVCQLQGFLSWFF-AFTSLQTMT 109


>SB_14414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = -3

Query: 289 DIEVKQPKNLAKK*LEVQKLYELEKIY*PNIVIPTYVQNI 170
           +IE++QP+ + ++    QKL EL K++  + ++   ++N+
Sbjct: 163 NIEIQQPRTIQERCRAAQKLKELNKLHPSSRLLVDTMENL 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,140
Number of Sequences: 59808
Number of extensions: 200322
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)