Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31007
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase / ...    27   8.7  
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    27   8.7  

>At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase /
           DEDOL-PP synthase (DPS) identical to dehydrodolichyl
           diphosphate synthase [Arabidopsis thaliana] GI:7960765
          Length = 303

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 137 LYSNCSHLTT*NILYIGRYDDIRSIYFFKLVQFLYLQLFFCQIFW 271
           L +NCS   + +++   R    + I  F L Q  Y +LFF  +FW
Sbjct: 235 LLTNCSDFPSPDLMI--RTSGEQRISNFFLWQLAYSELFFSPVFW 277


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 69  SIDSTLELN---LNTKMMFSRIEENVYTVTVHILQLKIF 176
           S+DS +  N   L  +MM S +E+N  T+  + L L  F
Sbjct: 369 SLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDSF 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,391,588
Number of Sequences: 28952
Number of extensions: 143826
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)