Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31005
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.6  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   3.4  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   3.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   4.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   6.0  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   6.0  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +3

Query: 678 NEKXXXXXXXXXXXXSVGFRTGTGKLRLRNGYWPSTRETYTPKERFPGFGNTQNGVE 848
           NEK             VGF++ T +  LR   W S R T T      GF N    ++
Sbjct: 791 NEKNGVNKAYDLPFYCVGFKSATPEYTLRTRIWASLR-TQTLYRTINGFSNYSRAIK 846


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 530 QILQYESRA-TNRSNDRSFPENY*MYIP*VRCLWNDTKTRRALVL 661
           +IL  E R  T RS D  FP ++ +++    C+ ND+ T   +VL
Sbjct: 141 RILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSSTPTLVVL 185


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 308 NQTDFSFFPVLPN-PMRNVKSRPWKN 234
           N TDF+ FP LP+ P  + +  PW N
Sbjct: 363 NSTDFNTFPPLPSTPRISSEDIPWDN 388


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 212 INGYRSCCSSRAYFLHSSLDLEELGRRKSPSDFRRHERHN 331
           IN      S +   LHSS   +   R K  +D++ H +HN
Sbjct: 541 INNSTEDLSKKHPALHSSRPSDSRSRSKFGNDYQSHSKHN 580


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 306 ISEGMRGTMASIADDKNNR--QNRLVQYLLD-TLHMHNTYSFGYFFCEVLNFANVVGN 470
           +S+ MR T  +I DD N+R  +++  +++   + H  N +S      + +   N + +
Sbjct: 696 MSDAMRQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVFSLNLVISDAMKLTNNIAD 753


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = +3

Query: 288 EGKVRLISEGMRGTMASIADDKNNRQNRLVQYLLD--TLHMHNTYSFGYFFCEVLNFANV 461
           +GKVR  S    G M  I+ DK     RLV  +    T+H        Y  C+V      
Sbjct: 73  DGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLG 132

Query: 462 VGNIFFLDTFLGRRI 506
              + FL T  GR I
Sbjct: 133 AKGVPFLVTHDGRTI 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,853,229
Number of Sequences: 5004
Number of extensions: 84699
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)