Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31005
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1347 - 29492460-29494685                                         29   4.7  
01_01_0421 + 3181139-3184207                                           29   4.7  
11_04_0141 + 13947716-13947770,13947885-13949095                       29   6.3  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    28   8.3  

>06_03_1347 - 29492460-29494685
          Length = 741

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 375 VQYLLDTLHMHNTYSFGYFFCEVLNFANVVGNIFFLDTFLGRRILTYGTDVVRF 536
           VQ LLD L      S G+F+   ++  N V N+F+ D        ++G D V F
Sbjct: 271 VQDLLDYLRKMQAESPGFFYAMQVDSGNCVTNVFWADAKARMAYKSFG-DAVTF 323


>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 258 IPHWIWKNWEEGK 296
           IPHW W+NW++ +
Sbjct: 556 IPHWAWENWKDAQ 568


>11_04_0141 + 13947716-13947770,13947885-13949095
          Length = 421

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 216 MGTVHAVLPGPTFYIPHWIWKNWEEGKVRLISEGMRGTMASIADDKNNR 362
           +G +H +     +Y P W+W+  E G+   +    R    + A DK  R
Sbjct: 297 LGYMHGMESQEQWY-PRWVWQRLEHGETEAVVARARAQGGAAAADKAER 344


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 89   DT*SIRSAGSRTHSPCRILHLKPQPILVSATTMMRNAYTLTINGYRSCCSS 241
            DT S    G   H  CR++H  P P+ + A+  +       I+  RSC ++
Sbjct: 1758 DTESSSVLGIPCHDLCRLMHFGPSPVKLIASQCLLELLN-RISDQRSCLNA 1807


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,785,608
Number of Sequences: 37544
Number of extensions: 544381
Number of successful extensions: 1423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)